RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 IP6K1Q92551 441 aa30.66■■■□□ 2.5
CPSF4-204ENST00000436336 ABCC6O95255 1503 aa30.65■■■□□ 2.5
CPSF4-204ENST00000436336 COL18A1P39060 1754 aa30.65■■■□□ 2.5
CPSF4-204ENST00000436336 CPDO75976 1380 aa30.64■■■□□ 2.5
CPSF4-204ENST00000436336 RGPD1P0DJD0 1748 aa30.64■■■□□ 2.5
CPSF4-204ENST00000436336 U2SURPO15042 1029 aaKnown RBP30.64■■■□□ 2.5
CPSF4-204ENST00000436336 ZC3H6P61129 1189 aaKnown RBP30.64■■■□□ 2.5
CPSF4-204ENST00000436336 EIF4A2Q14240 407 aaKnown RBP30.63■■■□□ 2.49
CPSF4-204ENST00000436336 U2AF1L5P0DN76 240 aaPredicted RBP30.62■■■□□ 2.49
CPSF4-204ENST00000436336 U2AF1Q01081 240 aaKnown RBP eCLIP30.62■■■□□ 2.49
CPSF4-204ENST00000436336 ZBTB7CA1YPR0 619 aa30.61■■■□□ 2.49
CPSF4-204ENST00000436336 HAP1P54257 671 aaPredicted RBP30.61■■■□□ 2.49
CPSF4-204ENST00000436336 HNRNPUQ00839 825 aaKnown RBP eCLIP30.6■■■□□ 2.49
CPSF4-204ENST00000436336 KIAA0232Q92628 1395 aa30.59■■■□□ 2.49
CPSF4-204ENST00000436336 LMO7Q8WWI1 1683 aa30.54■■■□□ 2.48
CPSF4-204ENST00000436336 RGPD2P0DJD1 1756 aa30.54■■■□□ 2.48
CPSF4-204ENST00000436336 PNNQ9H307 717 aaKnown RBP30.53■■■□□ 2.48
CPSF4-204ENST00000436336 FAM208AQ9UK61 1670 aaKnown RBP30.53■■■□□ 2.48
CPSF4-204ENST00000436336 FCHSD2O94868 740 aa30.53■■■□□ 2.48
CPSF4-204ENST00000436336 CCDC146Q8IYE0 955 aa30.52■■■□□ 2.48
CPSF4-204ENST00000436336 AXIN2Q9Y2T1 843 aa30.52■■■□□ 2.48
CPSF4-204ENST00000436336 RUNDC1Q96C34 613 aa30.51■■■□□ 2.47
CPSF4-204ENST00000436336 PRDM11Q9NQV5 511 aa30.51■■■□□ 2.47
CPSF4-204ENST00000436336 JCADQ9P266 1359 aa30.51■■■□□ 2.47
CPSF4-204ENST00000436336 LTV1Q96GA3 475 aaPredicted RBP30.5■■■□□ 2.47
CPSF4-204ENST00000436336 CHRNA2Q15822 529 aa30.5■■■□□ 2.47
CPSF4-204ENST00000436336 COL14A1Q05707 1796 aaKnown RBP30.5■■■□□ 2.47
CPSF4-204ENST00000436336 IGSF1Q8N6C5 1336 aa30.49■■■□□ 2.47
CPSF4-204ENST00000436336 RSPH6AQ9H0K4 717 aa30.49■■■□□ 2.47
CPSF4-204ENST00000436336 CAMTA1Q9Y6Y1 1673 aa30.49■■■□□ 2.47
CPSF4-204ENST00000436336 EYA1Q99502 592 aa30.48■■■□□ 2.47
CPSF4-204ENST00000436336 HMOX1P09601 288 aa30.47■■■□□ 2.47
CPSF4-204ENST00000436336 ANKRD24Q8TF21 1146 aa30.47■■■□□ 2.47
CPSF4-204ENST00000436336 PLEKHF1Q96S99 279 aa30.47■■■□□ 2.47
CPSF4-204ENST00000436336 ERBB3P21860 1342 aa30.46■■■□□ 2.47
CPSF4-204ENST00000436336 ZBED9Q6R2W3 1325 aa30.46■■■□□ 2.47
CPSF4-204ENST00000436336 SULT6B1Q6IMI4 303 aa30.45■■■□□ 2.47
CPSF4-204ENST00000436336 KDRP35968 1356 aa30.45■■■□□ 2.47
CPSF4-204ENST00000436336 PRKAR2BP31323 418 aa30.44■■■□□ 2.46
CPSF4-204ENST00000436336 HSPA1LP34931 641 aa30.44■■■□□ 2.46
CPSF4-204ENST00000436336 APAF1O14727 1248 aa30.43■■■□□ 2.46
CPSF4-204ENST00000436336 MAPK8IP3Q9UPT6 1336 aa30.43■■■□□ 2.46
CPSF4-204ENST00000436336 FAM83GA6ND36 823 aa30.42■■■□□ 2.46
CPSF4-204ENST00000436336 NEFMP07197 916 aa30.42■■■□□ 2.46
CPSF4-204ENST00000436336 AEBP1Q8IUX7 1158 aa30.42■■■□□ 2.46
CPSF4-204ENST00000436336 PLCH1Q4KWH8 1693 aa30.4■■■□□ 2.46
CPSF4-204ENST00000436336 NCAPD2Q15021 1401 aa30.4■■■□□ 2.46
CPSF4-204ENST00000436336 NBPF6Q5VWK0 638 aa30.4■■■□□ 2.46
CPSF4-204ENST00000436336 TCP11L2Q8N4U5 519 aa30.4■■■□□ 2.46
CPSF4-204ENST00000436336 NGEFQ8N5V2 710 aa30.4■■■□□ 2.46
CPSF4-204ENST00000436336 NBPF4Q96M43 638 aa30.4■■■□□ 2.46
CPSF4-204ENST00000436336 COL5A2P05997 1499 aaPredicted RBP30.4■■■□□ 2.46
CPSF4-204ENST00000436336 SENP3-EIF4A1A0A087X0R7 540 aa30.39■■■□□ 2.46
CPSF4-204ENST00000436336 SPATA31A6Q5VVP1 1343 aa30.38■■■□□ 2.45
CPSF4-204ENST00000436336 NUTM2BA6NNL0 878 aaPredicted RBP30.36■■■□□ 2.45
CPSF4-204ENST00000436336 NUTM2EB1AL46 878 aaPredicted RBP30.36■■■□□ 2.45
CPSF4-204ENST00000436336 NUTM2AQ8IVF1 878 aaPredicted RBP30.36■■■□□ 2.45
CPSF4-204ENST00000436336 DLG5Q8TDM6 1919 aa30.36■■■□□ 2.45
CPSF4-204ENST00000436336 CSB-PGBD3P0DP91 1061 aa30.36■■■□□ 2.45
CPSF4-204ENST00000436336 NCBP3Q53F19 620 aaKnown RBP30.36■■■□□ 2.45
CPSF4-204ENST00000436336 SALL2Q9Y467 1007 aaPredicted RBP30.35■■■□□ 2.45
CPSF4-204ENST00000436336 NWD2Q9ULI1 1742 aa30.35■■■□□ 2.45
CPSF4-204ENST00000436336 WDR17Q8IZU2 1322 aa30.34■■■□□ 2.45
CPSF4-204ENST00000436336 CENPBP07199 599 aaPredicted RBP30.34■■■□□ 2.45
CPSF4-204ENST00000436336 ADAMTS2O95450 1211 aa30.33■■■□□ 2.45
CPSF4-204ENST00000436336 USHBP1Q8N6Y0 703 aa30.33■■■□□ 2.45
CPSF4-204ENST00000436336 PHACTR3Q96KR7 559 aa30.33■■■□□ 2.45
CPSF4-204ENST00000436336 NRAPQ86VF7 1730 aa30.32■■■□□ 2.44
CPSF4-204ENST00000436336 TMPOP42166 694 aaKnown RBP30.31■■■□□ 2.44
CPSF4-204ENST00000436336 NLRP2Q9NX02 1062 aa30.31■■■□□ 2.44
CPSF4-204ENST00000436336 BTG4Q9NY30 223 aa30.31■■■□□ 2.44
CPSF4-204ENST00000436336 RRP7AQ9Y3A4 280 aaKnown RBP30.3■■■□□ 2.44
CPSF4-204ENST00000436336 EVA1CP58658 441 aa30.29■■■□□ 2.44
CPSF4-204ENST00000436336 NEUROD2Q15784 382 aa30.28■■■□□ 2.44
CPSF4-204ENST00000436336 NFE2L2Q16236 605 aa30.28■■■□□ 2.44
CPSF4-204ENST00000436336 CCDC27Q2M243 656 aa30.28■■■□□ 2.44
CPSF4-204ENST00000436336 ZNF521Q96K83 1311 aa30.27■■■□□ 2.44
CPSF4-204ENST00000436336 STRN4Q9NRL3 753 aa30.27■■■□□ 2.44
CPSF4-204ENST00000436336 LRP6O75581 1613 aa30.27■■■□□ 2.44
CPSF4-204ENST00000436336 TOM1L2Q6ZVM7 507 aa30.26■■■□□ 2.43
CPSF4-204ENST00000436336 PHF23Q9BUL5 403 aaPredicted RBP30.25■■■□□ 2.43
CPSF4-204ENST00000436336 SLIT2O94813 1529 aa30.25■■■□□ 2.43
CPSF4-204ENST00000436336 RIPK4P57078 832 aa30.25■■■□□ 2.43
CPSF4-204ENST00000436336 CRB1P82279 1406 aa30.24■■■□□ 2.43
CPSF4-204ENST00000436336 PDE3BQ13370 1112 aa30.24■■■□□ 2.43
CPSF4-204ENST00000436336 PARP4Q9UKK3 1724 aaKnown RBP30.23■■■□□ 2.43
CPSF4-204ENST00000436336 LARP1Q6PKG0 1096 aaKnown RBP30.23■■■□□ 2.43
CPSF4-204ENST00000436336 WWC1Q8IX03 1113 aa30.23■■■□□ 2.43
CPSF4-204ENST00000436336 CARD10Q9BWT7 1032 aa30.23■■■□□ 2.43
CPSF4-204ENST00000436336 PLEKHG2Q9H7P9 1386 aa30.23■■■□□ 2.43
CPSF4-204ENST00000436336 GAS2L2Q8NHY3 880 aa30.21■■■□□ 2.43
CPSF4-204ENST00000436336 MTHFSDQ2M296 383 aaKnown RBP30.2■■■□□ 2.43
CPSF4-204ENST00000436336 TRIM35Q9UPQ4 493 aa30.2■■■□□ 2.43
CPSF4-204ENST00000436336 RAPGEF4Q8WZA2 1011 aa30.19■■■□□ 2.42
CPSF4-204ENST00000436336 PKD1L3Q7Z443 1732 aa30.18■■■□□ 2.42
CPSF4-204ENST00000436336 LMOD3Q0VAK6 560 aa30.18■■■□□ 2.42
CPSF4-204ENST00000436336 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.18■■■□□ 2.42
CPSF4-204ENST00000436336 WNK3Q9BYP7 1800 aa30.18■■■□□ 2.42
CPSF4-204ENST00000436336 MEGF6O75095 1541 aa30.18■■■□□ 2.42
CPSF4-204ENST00000436336 GOLGA2Q08379 1002 aa30.17■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms