RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 KIAA0232Q92628 1395 aa15.24■□□□□ 0.03
LINC00539-203ENST00000434601 PLEKHG3A1L390 1219 aa15.24■□□□□ 0.03
LINC00539-203ENST00000434601 CCDC184Q52MB2 194 aa15.24■□□□□ 0.03
LINC00539-203ENST00000434601 NLRP13Q86W25 1043 aa15.24■□□□□ 0.03
LINC00539-203ENST00000434601 LRP5O75197 1615 aa15.24■□□□□ 0.03
LINC00539-203ENST00000434601 ACEP12821 1306 aa15.23■□□□□ 0.03
LINC00539-203ENST00000434601 SPATA31A1Q5TZJ5 1347 aa15.23■□□□□ 0.03
LINC00539-203ENST00000434601 EVA1CP58658 441 aa15.22■□□□□ 0.03
LINC00539-203ENST00000434601 USP6P35125 1406 aa15.22■□□□□ 0.03
LINC00539-203ENST00000434601 DISP2A7MBM2 1401 aa15.21■□□□□ 0.03
LINC00539-203ENST00000434601 ZC3H6P61129 1189 aaKnown RBP15.21■□□□□ 0.03
LINC00539-203ENST00000434601 FAM196AQ6ZSG2 479 aa15.21■□□□□ 0.03
LINC00539-203ENST00000434601 ABTB2Q8N961 1025 aa15.21■□□□□ 0.03
LINC00539-203ENST00000434601 YTHDC1Q96MU7 727 aaKnown RBP15.21■□□□□ 0.03
LINC00539-203ENST00000434601 ZNF692Q9BU19 519 aaPredicted RBP15.21■□□□□ 0.03
LINC00539-203ENST00000434601 STRN4Q9NRL3 753 aa15.21■□□□□ 0.03
LINC00539-203ENST00000434601 PPP2R1AP30153 589 aa15.2■□□□□ 0.02
LINC00539-203ENST00000434601 EN1Q05925 392 aaPredicted RBP15.2■□□□□ 0.02
LINC00539-203ENST00000434601 CHRNA2Q15822 529 aa15.2■□□□□ 0.02
LINC00539-203ENST00000434601 MORC1Q86VD1 984 aa15.2■□□□□ 0.02
LINC00539-203ENST00000434601 TNS1Q9HBL0 1735 aaKnown RBP15.2■□□□□ 0.02
LINC00539-203ENST00000434601 FAM182BQ5T319 152 aa15.19■□□□□ 0.02
LINC00539-203ENST00000434601 NUTM2GQ5VZR2 741 aa15.19■□□□□ 0.02
LINC00539-203ENST00000434601 BARGINQ6ZT62 677 aa15.19■□□□□ 0.02
LINC00539-203ENST00000434601 SSH2Q76I76 1423 aa15.18■□□□□ 0.02
LINC00539-203ENST00000434601 PSDA5PKW4 1024 aaPredicted RBP15.18■□□□□ 0.02
LINC00539-203ENST00000434601 CPDO75976 1380 aa15.18■□□□□ 0.02
LINC00539-203ENST00000434601 FYB1O15117 783 aa15.17■□□□□ 0.02
LINC00539-203ENST00000434601 PDE3BQ13370 1112 aa15.17■□□□□ 0.02
LINC00539-203ENST00000434601 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.17■□□□□ 0.02
LINC00539-203ENST00000434601 GGNBP2Q9H3C7 697 aa15.17■□□□□ 0.02
LINC00539-203ENST00000434601 USP35Q9P2H5 1018 aa15.17■□□□□ 0.02
LINC00539-203ENST00000434601 THRAP3Q9Y2W1 955 aaKnown RBP15.16■□□□□ 0.02
LINC00539-203ENST00000434601 USP19O94966 1318 aa15.16■□□□□ 0.02
LINC00539-203ENST00000434601 TTC21BQ7Z4L5 1316 aa15.16■□□□□ 0.02
LINC00539-203ENST00000434601 PIK3C2AO00443 1686 aa15.16■□□□□ 0.02
LINC00539-203ENST00000434601 USP54Q70EL1 1684 aa15.16■□□□□ 0.02
LINC00539-203ENST00000434601 TRIM37O94972 964 aa15.15■□□□□ 0.02
LINC00539-203ENST00000434601 TCP11L2Q8N4U5 519 aa15.15■□□□□ 0.02
LINC00539-203ENST00000434601 LMO7Q8WWI1 1683 aa15.15■□□□□ 0.02
LINC00539-203ENST00000434601 CAMTA1Q9Y6Y1 1673 aa15.15■□□□□ 0.02
LINC00539-203ENST00000434601 TTC21AQ8NDW8 1320 aa15.15■□□□□ 0.02
LINC00539-203ENST00000434601 GCP02774 474 aa15.14■□□□□ 0.01
LINC00539-203ENST00000434601 OVOS2A0A0J9YW53 1432 aa15.14■□□□□ 0.01
LINC00539-203ENST00000434601 OVOS2Q6IE36 1432 aa15.14■□□□□ 0.01
LINC00539-203ENST00000434601 APBA3O96018 575 aa15.13■□□□□ 0.01
LINC00539-203ENST00000434601 EZH2Q15910 746 aaKnown RBP15.13■□□□□ 0.01
LINC00539-203ENST00000434601 LARP1Q6PKG0 1096 aaKnown RBP15.13■□□□□ 0.01
LINC00539-203ENST00000434601 NME9Q86XW9 330 aa15.13■□□□□ 0.01
LINC00539-203ENST00000434601 FAM9BQ8IZU0 186 aa15.13■□□□□ 0.01
LINC00539-203ENST00000434601 PNISRQ8TF01 805 aaKnown RBP15.13■□□□□ 0.01
LINC00539-203ENST00000434601 CAMKK2Q96RR4 588 aa15.13■□□□□ 0.01
LINC00539-203ENST00000434601 TNNT2P45379 298 aaPredicted RBP15.12■□□□□ 0.01
LINC00539-203ENST00000434601 R3HDM1Q15032 1099 aaKnown RBP15.12■□□□□ 0.01
LINC00539-203ENST00000434601 PARP4Q9UKK3 1724 aaKnown RBP15.12■□□□□ 0.01
LINC00539-203ENST00000434601 NLRP6P59044 892 aa15.1■□□□□ 0.01
LINC00539-203ENST00000434601 NBPF14Q5TI25 921 aa15.1■□□□□ 0.01
LINC00539-203ENST00000434601 COG3Q96JB2 828 aa15.1■□□□□ 0.01
LINC00539-203ENST00000434601 USP31Q70CQ4 1352 aa15.1■□□□□ 0.01
LINC00539-203ENST00000434601 RREB1Q92766 1687 aa15.09■□□□□ 0.01
LINC00539-203ENST00000434601 CRB1P82279 1406 aa15.09■□□□□ 0.01
LINC00539-203ENST00000434601 SMG6Q86US8 1419 aaKnown RBP15.09■□□□□ 0.01
LINC00539-203ENST00000434601 COL5A2P05997 1499 aaPredicted RBP15.09■□□□□ 0.01
LINC00539-203ENST00000434601 INSRP06213 1382 aa15.09■□□□□ 0.01
LINC00539-203ENST00000434601 AATKQ6ZMQ8 1374 aa15.09■□□□□ 0.01
LINC00539-203ENST00000434601 COL3A1P02461 1466 aaPredicted RBP15.08■□□□□ 0.01
LINC00539-203ENST00000434601 CENPBP07199 599 aaPredicted RBP15.08■□□□□ 0
LINC00539-203ENST00000434601 SLIT3O75094 1523 aa15.07■□□□□ 0
LINC00539-203ENST00000434601 MTHFSP49914 203 aa15.07■□□□□ 0
LINC00539-203ENST00000434601 CFAP53Q96M91 514 aa15.07■□□□□ 0
LINC00539-203ENST00000434601 MAP2P11137 1827 aaKnown RBP15.07■□□□□ 0
LINC00539-203ENST00000434601 NUP188Q5SRE5 1749 aa15.06■□□□□ 0
LINC00539-203ENST00000434601 ZBTB7CA1YPR0 619 aa15.06■□□□□ 0
LINC00539-203ENST00000434601 SBF2Q86WG5 1849 aa15.06■□□□□ 0
LINC00539-203ENST00000434601 HNRNPUQ00839 825 aaKnown RBP eCLIP15.05■□□□□ -0
LINC00539-203ENST00000434601 WDR43Q15061 677 aaKnown RBP eCLIP15.05■□□□□ -0
LINC00539-203ENST00000434601 TOM1L2Q6ZVM7 507 aa15.05■□□□□ -0
LINC00539-203ENST00000434601 KCNH5Q8NCM2 988 aa15.05■□□□□ -0
LINC00539-203ENST00000434601 CDCA7Q9BWT1 371 aaPredicted RBP15.05■□□□□ -0
LINC00539-203ENST00000434601 OVOS2A0A0G2JMS6 1433 aa15.05■□□□□ -0
LINC00539-203ENST00000434601 RGPD3A6NKT7 1758 aaPredicted RBP15.04■□□□□ -0
LINC00539-203ENST00000434601 COL18A1P39060 1754 aa15.04■□□□□ -0
LINC00539-203ENST00000434601 RGPD4Q7Z3J3 1758 aa15.04■□□□□ -0
LINC00539-203ENST00000434601 DDB1Q16531 1140 aa15.04■□□□□ -0
LINC00539-203ENST00000434601 WNK3Q9BYP7 1800 aa15.03■□□□□ -0
LINC00539-203ENST00000434601 RGPD5Q99666 1765 aa15.03■□□□□ -0
LINC00539-203ENST00000434601 WDR17Q8IZU2 1322 aa15.02■□□□□ -0
LINC00539-203ENST00000434601 PEAK1Q9H792 1746 aa15.02□□□□□ -0.01
LINC00539-203ENST00000434601 LRRC37A3O60309 1634 aa15.02□□□□□ -0.01
LINC00539-203ENST00000434601 PLSCR1O15162 318 aa15.01□□□□□ -0.01
LINC00539-203ENST00000434601 POLKQ9UBT6 870 aa15.01□□□□□ -0.01
LINC00539-203ENST00000434601 ARHGEF25Q86VW2 580 aa15□□□□□ -0.01
LINC00539-203ENST00000434601 EMILIN1Q9Y6C2 1016 aa15□□□□□ -0.01
LINC00539-203ENST00000434601 NFAT5O94916 1531 aa15□□□□□ -0.01
LINC00539-203ENST00000434601 ZBED9Q6R2W3 1325 aa14.99□□□□□ -0.01
LINC00539-203ENST00000434601 FBLN1P23142 703 aa14.99□□□□□ -0.01
LINC00539-203ENST00000434601 RRS1Q15050 365 aaKnown RBP14.99□□□□□ -0.01
LINC00539-203ENST00000434601 SPON1Q9HCB6 807 aa14.99□□□□□ -0.01
LINC00539-203ENST00000434601 ADAMTS8Q9UP79 889 aa14.99□□□□□ -0.01
LINC00539-203ENST00000434601 LTN1O94822 1766 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms