RNA–Protein interactions for RNA: ENST00000428643.1

HMGA1P4-201, Transcript of high mobility group AT-hook 1 pseudogene 4, humanhuman

TSL 2 BASIC

Gene HMGA1P4, Length 334 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P4-201ENST00000428643 WDR43Q15061 677 aaKnown RBP eCLIP10.6□□□□□ -0.71
HMGA1P4-201ENST00000428643 ARHGEF25Q86VW2 580 aa10.6□□□□□ -0.71
HMGA1P4-201ENST00000428643 COL3A1P02461 1466 aaPredicted RBP10.6□□□□□ -0.71
HMGA1P4-201ENST00000428643 SHPRHQ149N8 1683 aa10.6□□□□□ -0.71
HMGA1P4-201ENST00000428643 PEAK1Q9H792 1746 aa10.59□□□□□ -0.71
HMGA1P4-201ENST00000428643 ADAMTS2O95450 1211 aa10.59□□□□□ -0.71
HMGA1P4-201ENST00000428643 HOXC9P31274 260 aa10.59□□□□□ -0.71
HMGA1P4-201ENST00000428643 CHRNA2Q15822 529 aa10.59□□□□□ -0.71
HMGA1P4-201ENST00000428643 HSP90AB2PQ58FF8 381 aa10.59□□□□□ -0.71
HMGA1P4-201ENST00000428643 SPATA31A6Q5VVP1 1343 aa10.58□□□□□ -0.71
HMGA1P4-201ENST00000428643 INSRP06213 1382 aa10.58□□□□□ -0.72
HMGA1P4-201ENST00000428643 U2SURPO15042 1029 aaKnown RBP10.58□□□□□ -0.72
HMGA1P4-201ENST00000428643 DIAPH1O60610 1272 aaKnown RBP10.58□□□□□ -0.72
HMGA1P4-201ENST00000428643 IP6K1Q92551 441 aa10.58□□□□□ -0.72
HMGA1P4-201ENST00000428643 LTV1Q96GA3 475 aaPredicted RBP10.58□□□□□ -0.72
HMGA1P4-201ENST00000428643 NUDCQ9Y266 331 aa10.58□□□□□ -0.72
HMGA1P4-201ENST00000428643 ABCC6O95255 1503 aa10.58□□□□□ -0.72
HMGA1P4-201ENST00000428643 BLMP54132 1417 aaPredicted RBP10.58□□□□□ -0.72
HMGA1P4-201ENST00000428643 FAM9BQ8IZU0 186 aa10.57□□□□□ -0.72
HMGA1P4-201ENST00000428643 U2AF1L5P0DN76 240 aaPredicted RBP10.56□□□□□ -0.72
HMGA1P4-201ENST00000428643 CSB-PGBD3P0DP91 1061 aa10.56□□□□□ -0.72
HMGA1P4-201ENST00000428643 U2AF1Q01081 240 aaKnown RBP eCLIP10.56□□□□□ -0.72
HMGA1P4-201ENST00000428643 EIF4A2Q14240 407 aaKnown RBP10.56□□□□□ -0.72
HMGA1P4-201ENST00000428643 PNISRQ8TF01 805 aaKnown RBP10.56□□□□□ -0.72
HMGA1P4-201ENST00000428643 LTN1O94822 1766 aa10.56□□□□□ -0.72
HMGA1P4-201ENST00000428643 LRP6O75581 1613 aa10.55□□□□□ -0.72
HMGA1P4-201ENST00000428643 IL13P35225 146 aa10.55□□□□□ -0.72
HMGA1P4-201ENST00000428643 MEX3CQ5U5Q3 659 aaKnown RBP10.55□□□□□ -0.72
HMGA1P4-201ENST00000428643 ANKRD24Q8TF21 1146 aa10.55□□□□□ -0.72
HMGA1P4-201ENST00000428643 ERBB3P21860 1342 aa10.55□□□□□ -0.72
HMGA1P4-201ENST00000428643 FAM83GA6ND36 823 aa10.54□□□□□ -0.72
HMGA1P4-201ENST00000428643 AXIN2Q9Y2T1 843 aa10.54□□□□□ -0.72
HMGA1P4-201ENST00000428643 COL14A1Q05707 1796 aaKnown RBP10.53□□□□□ -0.72
HMGA1P4-201ENST00000428643 C8orf37Q96NL8 207 aa10.53□□□□□ -0.72
HMGA1P4-201ENST00000428643 STRN4Q9NRL3 753 aa10.53□□□□□ -0.72
HMGA1P4-201ENST00000428643 BTG4Q9NY30 223 aa10.53□□□□□ -0.72
HMGA1P4-201ENST00000428643 ADAMTS8Q9UP79 889 aa10.53□□□□□ -0.72
HMGA1P4-201ENST00000428643 COL5A2P05997 1499 aaPredicted RBP10.53□□□□□ -0.72
HMGA1P4-201ENST00000428643 LMO7Q8WWI1 1683 aa10.53□□□□□ -0.72
HMGA1P4-201ENST00000428643 MAP2P11137 1827 aaKnown RBP10.52□□□□□ -0.73
HMGA1P4-201ENST00000428643 HMOX1P09601 288 aa10.52□□□□□ -0.73
HMGA1P4-201ENST00000428643 EVA1CP58658 441 aa10.52□□□□□ -0.73
HMGA1P4-201ENST00000428643 NLRP2Q9NX02 1062 aa10.52□□□□□ -0.73
HMGA1P4-201ENST00000428643 CAMTA1Q9Y6Y1 1673 aa10.52□□□□□ -0.73
HMGA1P4-201ENST00000428643 SULT6B1Q6IMI4 303 aa10.51□□□□□ -0.73
HMGA1P4-201ENST00000428643 TOM1L2Q6ZVM7 507 aa10.51□□□□□ -0.73
HMGA1P4-201ENST00000428643 AEBP1Q8IUX7 1158 aa10.51□□□□□ -0.73
HMGA1P4-201ENST00000428643 CCDC146Q8IYE0 955 aa10.51□□□□□ -0.73
HMGA1P4-201ENST00000428643 USHBP1Q8N6Y0 703 aa10.51□□□□□ -0.73
HMGA1P4-201ENST00000428643 NGLY1Q96IV0 654 aa10.51□□□□□ -0.73
HMGA1P4-201ENST00000428643 YTHDC1Q96MU7 727 aaKnown RBP10.51□□□□□ -0.73
HMGA1P4-201ENST00000428643 EYA1Q99502 592 aa10.51□□□□□ -0.73
HMGA1P4-201ENST00000428643 WDR17Q8IZU2 1322 aa10.51□□□□□ -0.73
HMGA1P4-201ENST00000428643 IGSF1Q8N6C5 1336 aa10.51□□□□□ -0.73
HMGA1P4-201ENST00000428643 PLCH1Q4KWH8 1693 aa10.5□□□□□ -0.73
HMGA1P4-201ENST00000428643 COL18A1P39060 1754 aa10.5□□□□□ -0.73
HMGA1P4-201ENST00000428643 PRKAR2BP31323 418 aa10.5□□□□□ -0.73
HMGA1P4-201ENST00000428643 NBPF6Q5VWK0 638 aa10.5□□□□□ -0.73
HMGA1P4-201ENST00000428643 POTEHQ6S545 545 aa10.5□□□□□ -0.73
HMGA1P4-201ENST00000428643 NBPF4Q96M43 638 aa10.5□□□□□ -0.73
HMGA1P4-201ENST00000428643 MAPK8IP3Q9UPT6 1336 aa10.5□□□□□ -0.73
HMGA1P4-201ENST00000428643 NEFMP07197 916 aa10.49□□□□□ -0.73
HMGA1P4-201ENST00000428643 LARP1Q6PKG0 1096 aaKnown RBP10.49□□□□□ -0.73
HMGA1P4-201ENST00000428643 RSPH6AQ9H0K4 717 aa10.49□□□□□ -0.73
HMGA1P4-201ENST00000428643 SLIT2O94813 1529 aa10.48□□□□□ -0.73
HMGA1P4-201ENST00000428643 RGPD1P0DJD0 1748 aa10.48□□□□□ -0.73
HMGA1P4-201ENST00000428643 FCHSD2O94868 740 aa10.48□□□□□ -0.73
HMGA1P4-201ENST00000428643 PNNQ9H307 717 aaKnown RBP10.48□□□□□ -0.73
HMGA1P4-201ENST00000428643 CCDC9Q9Y3X0 531 aaKnown RBP10.48□□□□□ -0.73
HMGA1P4-201ENST00000428643 AFF2P51816 1311 aa10.48□□□□□ -0.73
HMGA1P4-201ENST00000428643 KDRP35968 1356 aa10.48□□□□□ -0.73
HMGA1P4-201ENST00000428643 CRB1P82279 1406 aa10.48□□□□□ -0.73
HMGA1P4-201ENST00000428643 FAM208AQ9UK61 1670 aaKnown RBP10.47□□□□□ -0.73
HMGA1P4-201ENST00000428643 SENP3-EIF4A1A0A087X0R7 540 aa10.47□□□□□ -0.73
HMGA1P4-201ENST00000428643 HNRNPUQ00839 825 aaKnown RBP eCLIP10.47□□□□□ -0.73
HMGA1P4-201ENST00000428643 UNC5CLQ8IV45 518 aa10.47□□□□□ -0.73
HMGA1P4-201ENST00000428643 RAPGEF4Q8WZA2 1011 aa10.47□□□□□ -0.73
HMGA1P4-201ENST00000428643 RUNDC1Q96C34 613 aa10.47□□□□□ -0.73
HMGA1P4-201ENST00000428643 USP35Q9P2H5 1018 aa10.47□□□□□ -0.73
HMGA1P4-201ENST00000428643 USP21Q9UK80 565 aa10.47□□□□□ -0.73
HMGA1P4-201ENST00000428643 NCAPD2Q15021 1401 aa10.47□□□□□ -0.73
HMGA1P4-201ENST00000428643 FNBP4Q8N3X1 1017 aaPredicted RBP10.46□□□□□ -0.73
HMGA1P4-201ENST00000428643 CARD10Q9BWT7 1032 aa10.46□□□□□ -0.73
HMGA1P4-201ENST00000428643 NRAPQ86VF7 1730 aa10.46□□□□□ -0.74
HMGA1P4-201ENST00000428643 NWD2Q9ULI1 1742 aa10.46□□□□□ -0.74
HMGA1P4-201ENST00000428643 BCL9LQ86UU0 1499 aa10.45□□□□□ -0.74
HMGA1P4-201ENST00000428643 RGPD5Q99666 1765 aa10.44□□□□□ -0.74
HMGA1P4-201ENST00000428643 MEGF6O75095 1541 aa10.44□□□□□ -0.74
HMGA1P4-201ENST00000428643 APAF1O14727 1248 aa10.44□□□□□ -0.74
HMGA1P4-201ENST00000428643 TATP17735 454 aaPredicted RBP10.44□□□□□ -0.74
HMGA1P4-201ENST00000428643 TCP11L2Q8N4U5 519 aa10.44□□□□□ -0.74
HMGA1P4-201ENST00000428643 PHACTR3Q96KR7 559 aa10.44□□□□□ -0.74
HMGA1P4-201ENST00000428643 PLEKHF1Q96S99 279 aa10.44□□□□□ -0.74
HMGA1P4-201ENST00000428643 RRP7AQ9Y3A4 280 aaKnown RBP10.44□□□□□ -0.74
HMGA1P4-201ENST00000428643 SPATA31A1Q5TZJ5 1347 aa10.43□□□□□ -0.74
HMGA1P4-201ENST00000428643 SPATA31A5Q5VU36 1347 aa10.43□□□□□ -0.74
HMGA1P4-201ENST00000428643 SPATA31A7Q8IWB4 1347 aa10.43□□□□□ -0.74
HMGA1P4-201ENST00000428643 IL2RBP14784 551 aa10.43□□□□□ -0.74
HMGA1P4-201ENST00000428643 NEUROD2Q15784 382 aa10.43□□□□□ -0.74
HMGA1P4-201ENST00000428643 VPS72Q15906 364 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms