RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 KIAA0232Q92628 1395 aa19.04■□□□□ 0.64
SF3B1-204ENST00000414963 ABCA3Q99758 1704 aa19.03■□□□□ 0.64
SF3B1-204ENST00000414963 BLMP54132 1417 aaPredicted RBP19.03■□□□□ 0.64
SF3B1-204ENST00000414963 HAP1P54257 671 aaPredicted RBP19.03■□□□□ 0.64
SF3B1-204ENST00000414963 EIF4A2Q14240 407 aaKnown RBP19.03■□□□□ 0.64
SF3B1-204ENST00000414963 SHPRHQ149N8 1683 aa19.02■□□□□ 0.64
SF3B1-204ENST00000414963 LTN1O94822 1766 aa19.02■□□□□ 0.64
SF3B1-204ENST00000414963 PRDM11Q9NQV5 511 aa19■□□□□ 0.63
SF3B1-204ENST00000414963 AXIN2Q9Y2T1 843 aa19■□□□□ 0.63
SF3B1-204ENST00000414963 COL18A1P39060 1754 aa19■□□□□ 0.63
SF3B1-204ENST00000414963 SPATA31A6Q5VVP1 1343 aa19■□□□□ 0.63
SF3B1-204ENST00000414963 ZBTB7CA1YPR0 619 aa18.98■□□□□ 0.63
SF3B1-204ENST00000414963 FAM83GA6ND36 823 aa18.98■□□□□ 0.63
SF3B1-204ENST00000414963 U2SURPO15042 1029 aaKnown RBP18.98■□□□□ 0.63
SF3B1-204ENST00000414963 U2AF1L5P0DN76 240 aaPredicted RBP18.98■□□□□ 0.63
SF3B1-204ENST00000414963 U2AF1Q01081 240 aaKnown RBP eCLIP18.98■□□□□ 0.634e-8■□□□□ 11
SF3B1-204ENST00000414963 FCHSD2O94868 740 aa18.97■□□□□ 0.63
SF3B1-204ENST00000414963 CHRNA2Q15822 529 aa18.97■□□□□ 0.63
SF3B1-204ENST00000414963 IGSF1Q8N6C5 1336 aa18.96■□□□□ 0.63
SF3B1-204ENST00000414963 LMO7Q8WWI1 1683 aa18.95■□□□□ 0.62
SF3B1-204ENST00000414963 ANKRD24Q8TF21 1146 aa18.95■□□□□ 0.62
SF3B1-204ENST00000414963 FBXO41Q8TF61 875 aa18.95■□□□□ 0.62
SF3B1-204ENST00000414963 EYA1Q99502 592 aa18.95■□□□□ 0.62
SF3B1-204ENST00000414963 PNNQ9H307 717 aaKnown RBP18.95■□□□□ 0.62
SF3B1-204ENST00000414963 ERBB3P21860 1342 aa18.95■□□□□ 0.62
SF3B1-204ENST00000414963 RGPD1P0DJD0 1748 aa18.94■□□□□ 0.62
SF3B1-204ENST00000414963 KDRP35968 1356 aa18.93■□□□□ 0.62
SF3B1-204ENST00000414963 CAMTA1Q9Y6Y1 1673 aa18.93■□□□□ 0.62
SF3B1-204ENST00000414963 LTV1Q96GA3 475 aaPredicted RBP18.93■□□□□ 0.62
SF3B1-204ENST00000414963 PLEKHF1Q96S99 279 aa18.93■□□□□ 0.62
SF3B1-204ENST00000414963 RSPH6AQ9H0K4 717 aa18.93■□□□□ 0.62
SF3B1-204ENST00000414963 NCAPD2Q15021 1401 aa18.92■□□□□ 0.62
SF3B1-204ENST00000414963 COL14A1Q05707 1796 aaKnown RBP18.92■□□□□ 0.62
SF3B1-204ENST00000414963 NBPF6Q5VWK0 638 aa18.92■□□□□ 0.62
SF3B1-204ENST00000414963 RUNDC1Q96C34 613 aa18.92■□□□□ 0.62
SF3B1-204ENST00000414963 NBPF4Q96M43 638 aa18.92■□□□□ 0.62
SF3B1-204ENST00000414963 NUTM2BA6NNL0 878 aaPredicted RBP18.91■□□□□ 0.62
SF3B1-204ENST00000414963 NUTM2EB1AL46 878 aaPredicted RBP18.91■□□□□ 0.62
SF3B1-204ENST00000414963 SULT6B1Q6IMI4 303 aa18.91■□□□□ 0.62
SF3B1-204ENST00000414963 NUTM2AQ8IVF1 878 aaPredicted RBP18.91■□□□□ 0.62
SF3B1-204ENST00000414963 ADAMTS2O95450 1211 aa18.9■□□□□ 0.62
SF3B1-204ENST00000414963 COL5A2P05997 1499 aaPredicted RBP18.9■□□□□ 0.62
SF3B1-204ENST00000414963 HMOX1P09601 288 aa18.89■□□□□ 0.61
SF3B1-204ENST00000414963 NCBP3Q53F19 620 aaKnown RBP18.89■□□□□ 0.61
SF3B1-204ENST00000414963 WDR17Q8IZU2 1322 aa18.89■□□□□ 0.61
SF3B1-204ENST00000414963 PRKAR2BP31323 418 aa18.88■□□□□ 0.61
SF3B1-204ENST00000414963 AEBP1Q8IUX7 1158 aa18.88■□□□□ 0.61
SF3B1-204ENST00000414963 NGEFQ8N5V2 710 aa18.88■□□□□ 0.61
SF3B1-204ENST00000414963 BTG4Q9NY30 223 aa18.88■□□□□ 0.61
SF3B1-204ENST00000414963 RGPD5Q99666 1765 aa18.88■□□□□ 0.61
SF3B1-204ENST00000414963 HNRNPUQ00839 825 aaKnown RBP eCLIP18.87■□□□□ 0.61
SF3B1-204ENST00000414963 CCDC146Q8IYE0 955 aa18.87■□□□□ 0.61
SF3B1-204ENST00000414963 LRP6O75581 1613 aa18.86■□□□□ 0.61
SF3B1-204ENST00000414963 SLIT2O94813 1529 aa18.86■□□□□ 0.61
SF3B1-204ENST00000414963 CSB-PGBD3P0DP91 1061 aa18.86■□□□□ 0.61
SF3B1-204ENST00000414963 EVA1CP58658 441 aa18.86■□□□□ 0.61
SF3B1-204ENST00000414963 CARD10Q9BWT7 1032 aa18.86■□□□□ 0.61
SF3B1-204ENST00000414963 FAM208AQ9UK61 1670 aaKnown RBP18.85■□□□□ 0.61
SF3B1-204ENST00000414963 APAF1O14727 1248 aa18.85■□□□□ 0.61
SF3B1-204ENST00000414963 FNBP4Q8N3X1 1017 aaPredicted RBP18.85■□□□□ 0.61
SF3B1-204ENST00000414963 TCP11L2Q8N4U5 519 aa18.85■□□□□ 0.61
SF3B1-204ENST00000414963 YTHDC1Q96MU7 727 aaKnown RBP18.85■□□□□ 0.61
SF3B1-204ENST00000414963 NLRP2Q9NX02 1062 aa18.85■□□□□ 0.61
SF3B1-204ENST00000414963 PLEKHG2Q9H7P9 1386 aa18.84■□□□□ 0.61
SF3B1-204ENST00000414963 NEFMP07197 916 aa18.84■□□□□ 0.61
SF3B1-204ENST00000414963 PHACTR3Q96KR7 559 aa18.84■□□□□ 0.61
SF3B1-204ENST00000414963 MAPK8IP3Q9UPT6 1336 aa18.83■□□□□ 0.61
SF3B1-204ENST00000414963 LARP1Q6PKG0 1096 aaKnown RBP18.83■□□□□ 0.6
SF3B1-204ENST00000414963 CRB1P82279 1406 aa18.83■□□□□ 0.6
SF3B1-204ENST00000414963 ZBED9Q6R2W3 1325 aa18.82■□□□□ 0.6
SF3B1-204ENST00000414963 TOM1L2Q6ZVM7 507 aa18.82■□□□□ 0.6
SF3B1-204ENST00000414963 USHBP1Q8N6Y0 703 aa18.82■□□□□ 0.6
SF3B1-204ENST00000414963 NGLY1Q96IV0 654 aa18.82■□□□□ 0.6
SF3B1-204ENST00000414963 STRN4Q9NRL3 753 aa18.82■□□□□ 0.6
SF3B1-204ENST00000414963 NWD2Q9ULI1 1742 aa18.81■□□□□ 0.6
SF3B1-204ENST00000414963 TMPOP42166 694 aaKnown RBP18.81■□□□□ 0.6
SF3B1-204ENST00000414963 CCDC27Q2M243 656 aa18.81■□□□□ 0.6
SF3B1-204ENST00000414963 PHF23Q9BUL5 403 aaPredicted RBP18.81■□□□□ 0.6
SF3B1-204ENST00000414963 PLCH1Q4KWH8 1693 aa18.81■□□□□ 0.6
SF3B1-204ENST00000414963 NFE2L2Q16236 605 aa18.8■□□□□ 0.6
SF3B1-204ENST00000414963 UNC5CLQ8IV45 518 aa18.8■□□□□ 0.6
SF3B1-204ENST00000414963 C8orf37Q96NL8 207 aa18.8■□□□□ 0.6
SF3B1-204ENST00000414963 RGPD2P0DJD1 1756 aa18.8■□□□□ 0.6
SF3B1-204ENST00000414963 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.79■□□□□ 0.69e-27■■□□□ 14.2
SF3B1-204ENST00000414963 BCL9LQ86UU0 1499 aa18.78■□□□□ 0.6
SF3B1-204ENST00000414963 NRAPQ86VF7 1730 aa18.78■□□□□ 0.6
SF3B1-204ENST00000414963 MEX3CQ5U5Q3 659 aaKnown RBP18.78■□□□□ 0.6
SF3B1-204ENST00000414963 ZNF521Q96K83 1311 aa18.77■□□□□ 0.6
SF3B1-204ENST00000414963 AMOTQ4VCS5 1084 aa18.77■□□□□ 0.6
SF3B1-204ENST00000414963 GAS2L2Q8NHY3 880 aa18.77■□□□□ 0.6
SF3B1-204ENST00000414963 RAPGEF4Q8WZA2 1011 aa18.77■□□□□ 0.6
SF3B1-204ENST00000414963 TATP17735 454 aaPredicted RBP18.76■□□□□ 0.59
SF3B1-204ENST00000414963 RIPK4P57078 832 aa18.76■□□□□ 0.59
SF3B1-204ENST00000414963 VPS72Q15906 364 aa18.76■□□□□ 0.59
SF3B1-204ENST00000414963 MTHFSDQ2M296 383 aaKnown RBP18.76■□□□□ 0.59
SF3B1-204ENST00000414963 PLEKHO1Q53GL0 409 aaPredicted RBP18.76■□□□□ 0.59
SF3B1-204ENST00000414963 THRAP3Q9Y2W1 955 aaKnown RBP18.76■□□□□ 0.59
SF3B1-204ENST00000414963 SPATA31A1Q5TZJ5 1347 aa18.75■□□□□ 0.59
SF3B1-204ENST00000414963 SPATA31A5Q5VU36 1347 aa18.75■□□□□ 0.59
SF3B1-204ENST00000414963 SPATA31A7Q8IWB4 1347 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms