RNA–Protein interactions for RNA: ENST00000414220.2

CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-202ENST00000414220 CARD14Q9BXL6 1004 aa20.21■□□□□ 0.83
CHD1-202ENST00000414220 CAMTA1Q9Y6Y1 1673 aa20.21■□□□□ 0.83
CHD1-202ENST00000414220 NRAPQ86VF7 1730 aa20.2■□□□□ 0.82
CHD1-202ENST00000414220 AMPHP49418 695 aa20.2■□□□□ 0.82
CHD1-202ENST00000414220 GLI3P10071 1580 aa20.2■□□□□ 0.82
CHD1-202ENST00000414220 COL5A2P05997 1499 aaPredicted RBP20.19■□□□□ 0.82
CHD1-202ENST00000414220 C11orf95C9JLR9 678 aaPredicted RBP20.19■□□□□ 0.82
CHD1-202ENST00000414220 BARGINQ6ZT62 677 aa20.19■□□□□ 0.82
CHD1-202ENST00000414220 AXIN2Q9Y2T1 843 aa20.19■□□□□ 0.82
CHD1-202ENST00000414220 KIF7Q2M1P5 1343 aa20.19■□□□□ 0.82
CHD1-202ENST00000414220 WDR17Q8IZU2 1322 aa20.19■□□□□ 0.82
CHD1-202ENST00000414220 NFAT5O94916 1531 aa20.18■□□□□ 0.82
CHD1-202ENST00000414220 KRT27Q7Z3Y8 459 aa20.18■□□□□ 0.82
CHD1-202ENST00000414220 KNSTRNQ9Y448 316 aa20.18■□□□□ 0.82
CHD1-202ENST00000414220 USP54Q70EL1 1684 aa20.18■□□□□ 0.82
CHD1-202ENST00000414220 CRB1P82279 1406 aa20.18■□□□□ 0.82
CHD1-202ENST00000414220 ZEB1P37275 1124 aaPredicted RBP20.17■□□□□ 0.82
CHD1-202ENST00000414220 IP6K1Q92551 441 aa20.17■□□□□ 0.82
CHD1-202ENST00000414220 ABCC6O95255 1503 aa20.17■□□□□ 0.82
CHD1-202ENST00000414220 LMO7Q8WWI1 1683 aa20.16■□□□□ 0.82
CHD1-202ENST00000414220 CDCA7Q9BWT1 371 aaPredicted RBP20.16■□□□□ 0.82
CHD1-202ENST00000414220 MYOM1P52179 1685 aa20.16■□□□□ 0.82
CHD1-202ENST00000414220 UPF1Q92900 1129 aaKnown RBP eCLIP20.15■□□□□ 0.82
CHD1-202ENST00000414220 PDE3BQ13370 1112 aa20.14■□□□□ 0.81
CHD1-202ENST00000414220 CCDC125Q86Z20 511 aa20.14■□□□□ 0.81
CHD1-202ENST00000414220 CARD10Q9BWT7 1032 aa20.14■□□□□ 0.81
CHD1-202ENST00000414220 BLMP54132 1417 aaPredicted RBP20.13■□□□□ 0.81
CHD1-202ENST00000414220 MAP3K19Q56UN5 1328 aa20.13■□□□□ 0.81
CHD1-202ENST00000414220 ANKRD24Q8TF21 1146 aa20.13■□□□□ 0.81
CHD1-202ENST00000414220 NLRP2Q9NX02 1062 aa20.13■□□□□ 0.81
CHD1-202ENST00000414220 NSD2O96028 1365 aa20.12■□□□□ 0.81
CHD1-202ENST00000414220 CCDC7Q96M83 1385 aa20.12■□□□□ 0.81
CHD1-202ENST00000414220 RTL1A6NKG5 1358 aa20.11■□□□□ 0.81
CHD1-202ENST00000414220 ERBB3P21860 1342 aa20.11■□□□□ 0.81
CHD1-202ENST00000414220 HOXC9P31274 260 aa20.11■□□□□ 0.81
CHD1-202ENST00000414220 SF3B2Q13435 895 aaKnown RBP20.11■□□□□ 0.81
CHD1-202ENST00000414220 KIF24Q5T7B8 1368 aa20.1■□□□□ 0.81
CHD1-202ENST00000414220 RRS1Q15050 365 aaKnown RBP20.1■□□□□ 0.81
CHD1-202ENST00000414220 LTV1Q96GA3 475 aaPredicted RBP20.1■□□□□ 0.81
CHD1-202ENST00000414220 COL18A1P39060 1754 aa20.1■□□□□ 0.81
CHD1-202ENST00000414220 MORC1Q86VD1 984 aa20.09■□□□□ 0.81
CHD1-202ENST00000414220 KIF20BQ96Q89 1820 aa20.09■□□□□ 0.81
CHD1-202ENST00000414220 FBLN1P23142 703 aa20.08■□□□□ 0.81
CHD1-202ENST00000414220 DDB1Q16531 1140 aa20.08■□□□□ 0.81
CHD1-202ENST00000414220 SMG6Q86US8 1419 aaKnown RBP20.08■□□□□ 0.8
CHD1-202ENST00000414220 WASHC2AQ641Q2 1341 aa20.07■□□□□ 0.8
CHD1-202ENST00000414220 PPM1GO15355 546 aaPredicted RBP20.07■□□□□ 0.8
CHD1-202ENST00000414220 FLT4P35916 1363 aa20.07■□□□□ 0.8
CHD1-202ENST00000414220 LTN1O94822 1766 aa20.06■□□□□ 0.8
CHD1-202ENST00000414220 FAM196AQ6ZSG2 479 aa20.06■□□□□ 0.8
CHD1-202ENST00000414220 EXOC5O00471 708 aa20.05■□□□□ 0.8
CHD1-202ENST00000414220 TNNT2P45379 298 aaPredicted RBP20.05■□□□□ 0.8
CHD1-202ENST00000414220 IL2RBP14784 551 aa20.04■□□□□ 0.8
CHD1-202ENST00000414220 INSRP06213 1382 aa20.03■□□□□ 0.8
CHD1-202ENST00000414220 THSD7AQ9UPZ6 1657 aa20.03■□□□□ 0.8
CHD1-202ENST00000414220 HSP90AB2PQ58FF8 381 aa20.02■□□□□ 0.8
CHD1-202ENST00000414220 EMILIN1Q9Y6C2 1016 aa20.02■□□□□ 0.8
CHD1-202ENST00000414220 RGPD5Q99666 1765 aa20■□□□□ 0.79
CHD1-202ENST00000414220 PER1O15534 1290 aaPredicted RBP20■□□□□ 0.79
CHD1-202ENST00000414220 AMER1Q5JTC6 1135 aaPredicted RBP20■□□□□ 0.79
CHD1-202ENST00000414220 POLKQ9UBT6 870 aa20■□□□□ 0.79
CHD1-202ENST00000414220 BRWD3Q6RI45 1802 aa19.99■□□□□ 0.79
CHD1-202ENST00000414220 FAM182BQ5T319 152 aa19.99■□□□□ 0.79
CHD1-202ENST00000414220 BAG6P46379 1132 aa19.98■□□□□ 0.79
CHD1-202ENST00000414220 CC2D1BQ5T0F9 858 aaKnown RBP19.97■□□□□ 0.79
CHD1-202ENST00000414220 RAPGEF4Q8WZA2 1011 aa19.97■□□□□ 0.79
CHD1-202ENST00000414220 OVOS2A0A0G2JMS6 1433 aa19.95■□□□□ 0.78
CHD1-202ENST00000414220 FAM208AQ9UK61 1670 aaKnown RBP19.95■□□□□ 0.78
CHD1-202ENST00000414220 NBPF6Q5VWK0 638 aa19.95■□□□□ 0.78
CHD1-202ENST00000414220 NBPF4Q96M43 638 aa19.95■□□□□ 0.78
CHD1-202ENST00000414220 PARP4Q9UKK3 1724 aaKnown RBP19.95■□□□□ 0.78
CHD1-202ENST00000414220 NPC1L1Q9UHC9 1359 aa19.95■□□□□ 0.78
CHD1-202ENST00000414220 DISP2A7MBM2 1401 aa19.94■□□□□ 0.78
CHD1-202ENST00000414220 ANKRD26Q9UPS8 1709 aa19.94■□□□□ 0.78
CHD1-202ENST00000414220 TATP17735 454 aaPredicted RBP19.94■□□□□ 0.78
CHD1-202ENST00000414220 TRIM37O94972 964 aa19.93■□□□□ 0.78
CHD1-202ENST00000414220 CNGB1Q14028 1251 aaPredicted RBP19.92■□□□□ 0.78
CHD1-202ENST00000414220 MARCH10Q8NA82 808 aaPredicted RBP19.91■□□□□ 0.78
CHD1-202ENST00000414220 ZCRB1Q8TBF4 217 aaKnown RBP19.91■□□□□ 0.78
CHD1-202ENST00000414220 TNS2Q63HR2 1409 aa19.91■□□□□ 0.78
CHD1-202ENST00000414220 USHBP1Q8N6Y0 703 aa19.9■□□□□ 0.78
CHD1-202ENST00000414220 MAP2P11137 1827 aaKnown RBP19.9■□□□□ 0.78
CHD1-202ENST00000414220 APBA3O96018 575 aa19.89■□□□□ 0.77
CHD1-202ENST00000414220 EIF4A2Q14240 407 aaKnown RBP19.89■□□□□ 0.77
CHD1-202ENST00000414220 DDX54Q8TDD1 881 aaKnown RBP19.89■□□□□ 0.77
CHD1-202ENST00000414220 MTHFSP49914 203 aa19.88■□□□□ 0.77
CHD1-202ENST00000414220 EYA1Q99502 592 aa19.88■□□□□ 0.77
CHD1-202ENST00000414220 PEAK1Q9H792 1746 aa19.88■□□□□ 0.77
CHD1-202ENST00000414220 LRRC37A3O60309 1634 aa19.87■□□□□ 0.77
CHD1-202ENST00000414220 BCL9O00512 1426 aa19.87■□□□□ 0.77
CHD1-202ENST00000414220 DEFB132Q7Z7B7 95 aa19.87■□□□□ 0.77
CHD1-202ENST00000414220 BCL11BQ9C0K0 894 aaPredicted RBP19.87■□□□□ 0.77
CHD1-202ENST00000414220 WNK3Q9BYP7 1800 aa19.86■□□□□ 0.77
CHD1-202ENST00000414220 SPG7Q9UQ90 795 aa19.86■□□□□ 0.77
CHD1-202ENST00000414220 EN1Q05925 392 aaPredicted RBP19.84■□□□□ 0.77
CHD1-202ENST00000414220 CFAP53Q96M91 514 aa19.84■□□□□ 0.77
CHD1-202ENST00000414220 RGPD1P0DJD0 1748 aa19.84■□□□□ 0.77
CHD1-202ENST00000414220 PCDH11XQ9BZA7 1347 aa19.83■□□□□ 0.77
CHD1-202ENST00000414220 PCDH11YQ9BZA8 1340 aa19.83■□□□□ 0.77
CHD1-202ENST00000414220 PARD3Q8TEW0 1356 aa19.83■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms