RNA–Protein interactions for RNA: ENST00000409783.6

PTCD3-203, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-203ENST00000409783 AXIN2Q9Y2T1 843 aa30.81■■■□□ 2.52
PTCD3-203ENST00000409783 COL5A2P05997 1499 aaPredicted RBP30.81■■■□□ 2.52
PTCD3-203ENST00000409783 FBLN1P23142 703 aa30.8■■■□□ 2.52
PTCD3-203ENST00000409783 RGS12O14924 1447 aa30.77■■■□□ 2.52
PTCD3-203ENST00000409783 PER1O15534 1290 aaPredicted RBP30.77■■■□□ 2.52
PTCD3-203ENST00000409783 STRN4Q9NRL3 753 aa30.76■■■□□ 2.51
PTCD3-203ENST00000409783 SPATA31A5Q5VU36 1347 aa30.75■■■□□ 2.51
PTCD3-203ENST00000409783 SPATA31A7Q8IWB4 1347 aa30.75■■■□□ 2.51
PTCD3-203ENST00000409783 MAP3K19Q56UN5 1328 aa30.74■■■□□ 2.51
PTCD3-203ENST00000409783 LARP1Q6PKG0 1096 aaKnown RBP30.73■■■□□ 2.51
PTCD3-203ENST00000409783 KNSTRNQ9Y448 316 aa30.73■■■□□ 2.51
PTCD3-203ENST00000409783 NSD2O96028 1365 aa30.73■■■□□ 2.51
PTCD3-203ENST00000409783 EVA1CP58658 441 aa30.72■■■□□ 2.51
PTCD3-203ENST00000409783 AMER1Q5JTC6 1135 aaPredicted RBP30.72■■■□□ 2.51
PTCD3-203ENST00000409783 CCDC9Q9Y3X0 531 aaKnown RBP30.72■■■□□ 2.51
PTCD3-203ENST00000409783 SPATA31A1Q5TZJ5 1347 aa30.72■■■□□ 2.51
PTCD3-203ENST00000409783 ONECUT3O60422 494 aaPredicted RBP30.7■■■□□ 2.51
PTCD3-203ENST00000409783 RRS1Q15050 365 aaKnown RBP30.69■■■□□ 2.5
PTCD3-203ENST00000409783 IP6K1Q92551 441 aa30.69■■■□□ 2.5
PTCD3-203ENST00000409783 PEAK1Q9H792 1746 aa30.69■■■□□ 2.5
PTCD3-203ENST00000409783 WDR17Q8IZU2 1322 aa30.68■■■□□ 2.5
PTCD3-203ENST00000409783 MAP2P11137 1827 aaKnown RBP30.68■■■□□ 2.5
PTCD3-203ENST00000409783 BLMP54132 1417 aaPredicted RBP30.67■■■□□ 2.5
PTCD3-203ENST00000409783 CRB1P82279 1406 aa30.67■■■□□ 2.5
PTCD3-203ENST00000409783 HOXC9P31274 260 aa30.65■■■□□ 2.5
PTCD3-203ENST00000409783 ERBB3P21860 1342 aa30.65■■■□□ 2.5
PTCD3-203ENST00000409783 RTL1A6NKG5 1358 aa30.65■■■□□ 2.5
PTCD3-203ENST00000409783 THSD7AQ9UPZ6 1657 aa30.65■■■□□ 2.5
PTCD3-203ENST00000409783 BRWD3Q6RI45 1802 aa30.64■■■□□ 2.5
PTCD3-203ENST00000409783 AMPHP49418 695 aa30.63■■■□□ 2.49
PTCD3-203ENST00000409783 FAM98CQ17RN3 349 aaKnown RBP30.63■■■□□ 2.49
PTCD3-203ENST00000409783 EMILIN1Q9Y6C2 1016 aa30.62■■■□□ 2.49
PTCD3-203ENST00000409783 KIF24Q5T7B8 1368 aa30.62■■■□□ 2.49
PTCD3-203ENST00000409783 NPC1L1Q9UHC9 1359 aa30.62■■■□□ 2.49
PTCD3-203ENST00000409783 BARGINQ6ZT62 677 aa30.6■■■□□ 2.49
PTCD3-203ENST00000409783 TOM1L2Q6ZVM7 507 aa30.6■■■□□ 2.49
PTCD3-203ENST00000409783 SEPT12Q8IYM1 358 aa30.6■■■□□ 2.49
PTCD3-203ENST00000409783 ANKRD24Q8TF21 1146 aa30.6■■■□□ 2.49
PTCD3-203ENST00000409783 USP35Q9P2H5 1018 aa30.6■■■□□ 2.49
PTCD3-203ENST00000409783 TCP11L2Q8N4U5 519 aa30.59■■■□□ 2.49
PTCD3-203ENST00000409783 POLKQ9UBT6 870 aa30.59■■■□□ 2.49
PTCD3-203ENST00000409783 FLT4P35916 1363 aa30.58■■■□□ 2.49
PTCD3-203ENST00000409783 TNNT2P45379 298 aaPredicted RBP30.58■■■□□ 2.49
PTCD3-203ENST00000409783 MORC1Q86VD1 984 aa30.58■■■□□ 2.49
PTCD3-203ENST00000409783 THRAP3Q9Y2W1 955 aaKnown RBP30.58■■■□□ 2.49
PTCD3-203ENST00000409783 WNK3Q9BYP7 1800 aa30.58■■■□□ 2.49
PTCD3-203ENST00000409783 FAM208AQ9UK61 1670 aaKnown RBP30.58■■■□□ 2.49
PTCD3-203ENST00000409783 CSB-PGBD3P0DP91 1061 aa30.57■■■□□ 2.48
PTCD3-203ENST00000409783 CARD10Q9BWT7 1032 aa30.57■■■□□ 2.48
PTCD3-203ENST00000409783 SOCS7O14512 581 aa30.56■■■□□ 2.48
PTCD3-203ENST00000409783 RGPD2P0DJD1 1756 aa30.56■■■□□ 2.48
PTCD3-203ENST00000409783 INSRP06213 1382 aa30.55■■■□□ 2.48
PTCD3-203ENST00000409783 HSP90AB2PQ58FF8 381 aa30.55■■■□□ 2.48
PTCD3-203ENST00000409783 SMG6Q86US8 1419 aaKnown RBP30.55■■■□□ 2.48
PTCD3-203ENST00000409783 CC2D1BQ5T0F9 858 aaKnown RBP30.54■■■□□ 2.48
PTCD3-203ENST00000409783 PARP4Q9UKK3 1724 aaKnown RBP30.53■■■□□ 2.48
PTCD3-203ENST00000409783 LTV1Q96GA3 475 aaPredicted RBP30.52■■■□□ 2.48
PTCD3-203ENST00000409783 DISP2A7MBM2 1401 aa30.51■■■□□ 2.47
PTCD3-203ENST00000409783 NLRP2Q9NX02 1062 aa30.51■■■□□ 2.47
PTCD3-203ENST00000409783 A0A0G2JS52 829 aa30.48■■■□□ 2.47
PTCD3-203ENST00000409783 PPM1GO15355 546 aaPredicted RBP30.48■■■□□ 2.47
PTCD3-203ENST00000409783 MYT1Q01538 1121 aa30.48■■■□□ 2.47
PTCD3-203ENST00000409783 LRRC37A3O60309 1634 aa30.46■■■□□ 2.47
PTCD3-203ENST00000409783 DDX10Q13206 875 aaKnown RBP30.45■■■□□ 2.47
PTCD3-203ENST00000409783 KRT27Q7Z3Y8 459 aa30.45■■■□□ 2.47
PTCD3-203ENST00000409783 NBPF6Q5VWK0 638 aa30.44■■■□□ 2.46
PTCD3-203ENST00000409783 NBPF4Q96M43 638 aa30.44■■■□□ 2.46
PTCD3-203ENST00000409783 CNGB1Q14028 1251 aaPredicted RBP30.42■■■□□ 2.46
PTCD3-203ENST00000409783 CDCA7Q9BWT1 371 aaPredicted RBP30.42■■■□□ 2.46
PTCD3-203ENST00000409783 NCAPD2Q15021 1401 aa30.39■■■□□ 2.46
PTCD3-203ENST00000409783 EP400Q96L91 3159 aa30.38■■■□□ 2.45
PTCD3-203ENST00000409783 EIF4A2Q14240 407 aaKnown RBP30.38■■■□□ 2.45
PTCD3-203ENST00000409783 UPF1Q92900 1129 aaKnown RBP eCLIP30.38■■■□□ 2.45
PTCD3-203ENST00000409783 ZNF316A6NFI3 1004 aaPredicted RBP30.37■■■□□ 2.45
PTCD3-203ENST00000409783 IL2RBP14784 551 aa30.37■■■□□ 2.45
PTCD3-203ENST00000409783 MTHFSP49914 203 aa30.37■■■□□ 2.45
PTCD3-203ENST00000409783 FAM182BQ5T319 152 aa30.36■■■□□ 2.45
PTCD3-203ENST00000409783 USHBP1Q8N6Y0 703 aa30.36■■■□□ 2.45
PTCD3-203ENST00000409783 DDB1Q16531 1140 aa30.35■■■□□ 2.45
PTCD3-203ENST00000409783 EYA1Q99502 592 aa30.34■■■□□ 2.45
PTCD3-203ENST00000409783 MEGF6O75095 1541 aa30.33■■■□□ 2.45
PTCD3-203ENST00000409783 TNS2Q63HR2 1409 aa30.33■■■□□ 2.45
PTCD3-203ENST00000409783 PDE3BQ13370 1112 aa30.33■■■□□ 2.45
PTCD3-203ENST00000409783 PARD3Q8TEW0 1356 aa30.32■■■□□ 2.44
PTCD3-203ENST00000409783 RGPD1P0DJD0 1748 aa30.31■■■□□ 2.44
PTCD3-203ENST00000409783 COL3A1P02461 1466 aaPredicted RBP30.3■■■□□ 2.44
PTCD3-203ENST00000409783 EXOC5O00471 708 aa30.29■■■□□ 2.44
PTCD3-203ENST00000409783 MARCH10Q8NA82 808 aaPredicted RBP30.29■■■□□ 2.44
PTCD3-203ENST00000409783 SHANK3Q9BYB0 1731 aa30.29■■■□□ 2.44
PTCD3-203ENST00000409783 OVOS2A0A0G2JMS6 1433 aa30.29■■■□□ 2.44
PTCD3-203ENST00000409783 IGSF1Q8N6C5 1336 aa30.28■■■□□ 2.44
PTCD3-203ENST00000409783 PPP2R1AP30153 589 aa30.28■■■□□ 2.44
PTCD3-203ENST00000409783 IL13P35225 146 aa30.28■■■□□ 2.44
PTCD3-203ENST00000409783 FAM196AQ6ZSG2 479 aa30.25■■■□□ 2.43
PTCD3-203ENST00000409783 SBF2Q86WG5 1849 aa30.24■■■□□ 2.43
PTCD3-203ENST00000409783 RAPGEF4Q8WZA2 1011 aa30.23■■■□□ 2.43
PTCD3-203ENST00000409783 BCL9O00512 1426 aa30.22■■■□□ 2.43
PTCD3-203ENST00000409783 PKD1L3Q7Z443 1732 aa30.22■■■□□ 2.43
PTCD3-203ENST00000409783 TATP17735 454 aaPredicted RBP30.21■■■□□ 2.43
PTCD3-203ENST00000409783 TNS1Q9HBL0 1735 aaKnown RBP30.2■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms