RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 LTN1O94822 1766 aa24.18■■□□□ 1.46
SDC1-203ENST00000403076 CPDO75976 1380 aa24.17■■□□□ 1.46
SDC1-203ENST00000403076 WDR43Q15061 677 aaKnown RBP eCLIP24.17■■□□□ 1.46
SDC1-203ENST00000403076 FAM9BQ8IZU0 186 aa24.17■■□□□ 1.46
SDC1-203ENST00000403076 INSRP06213 1382 aa24.16■■□□□ 1.46
SDC1-203ENST00000403076 SHPRHQ149N8 1683 aa24.16■■□□□ 1.46
SDC1-203ENST00000403076 ABCA3Q99758 1704 aa24.16■■□□□ 1.46
SDC1-203ENST00000403076 PEAK1Q9H792 1746 aa24.16■■□□□ 1.46
SDC1-203ENST00000403076 ADAMTS2O95450 1211 aa24.15■■□□□ 1.46
SDC1-203ENST00000403076 PNISRQ8TF01 805 aaKnown RBP24.15■■□□□ 1.46
SDC1-203ENST00000403076 LTV1Q96GA3 475 aaPredicted RBP24.15■■□□□ 1.46
SDC1-203ENST00000403076 U2SURPO15042 1029 aaKnown RBP24.14■■□□□ 1.45
SDC1-203ENST00000403076 SPATA31A6Q5VVP1 1343 aa24.14■■□□□ 1.45
SDC1-203ENST00000403076 EIF4A2Q14240 407 aaKnown RBP24.13■■□□□ 1.45
SDC1-203ENST00000403076 COL3A1P02461 1466 aaPredicted RBP24.12■■□□□ 1.45
SDC1-203ENST00000403076 FAM83GA6ND36 823 aa24.11■■□□□ 1.45
SDC1-203ENST00000403076 AXIN2Q9Y2T1 843 aa24.11■■□□□ 1.45
SDC1-203ENST00000403076 IL13P35225 146 aa24.1■■□□□ 1.45
SDC1-203ENST00000403076 U2AF1L5P0DN76 240 aaPredicted RBP24.1■■□□□ 1.45
SDC1-203ENST00000403076 U2AF1Q01081 240 aaKnown RBP eCLIP24.1■■□□□ 1.45
SDC1-203ENST00000403076 ANKRD24Q8TF21 1146 aa24.1■■□□□ 1.45
SDC1-203ENST00000403076 BLMP54132 1417 aaPredicted RBP24.1■■□□□ 1.45
SDC1-203ENST00000403076 CSB-PGBD3P0DP91 1061 aa24.08■■□□□ 1.45
SDC1-203ENST00000403076 ADAMTS8Q9UP79 889 aa24.08■■□□□ 1.45
SDC1-203ENST00000403076 MEX3CQ5U5Q3 659 aaKnown RBP24.06■■□□□ 1.44
SDC1-203ENST00000403076 ABCC6O95255 1503 aa24.06■■□□□ 1.44
SDC1-203ENST00000403076 EVA1CP58658 441 aa24.05■■□□□ 1.44
SDC1-203ENST00000403076 COL18A1P39060 1754 aa24.05■■□□□ 1.44
SDC1-203ENST00000403076 BTG4Q9NY30 223 aa24.05■■□□□ 1.44
SDC1-203ENST00000403076 ERBB3P21860 1342 aa24.03■■□□□ 1.44
SDC1-203ENST00000403076 NGLY1Q96IV0 654 aa24.03■■□□□ 1.44
SDC1-203ENST00000403076 C8orf37Q96NL8 207 aa24.03■■□□□ 1.44
SDC1-203ENST00000403076 EYA1Q99502 592 aa24.03■■□□□ 1.44
SDC1-203ENST00000403076 STRN4Q9NRL3 753 aa24.03■■□□□ 1.44
SDC1-203ENST00000403076 COL14A1Q05707 1796 aaKnown RBP24.02■■□□□ 1.44
SDC1-203ENST00000403076 RGPD5Q99666 1765 aa24.02■■□□□ 1.44
SDC1-203ENST00000403076 HMOX1P09601 288 aa24.02■■□□□ 1.44
SDC1-203ENST00000403076 NLRP2Q9NX02 1062 aa24.02■■□□□ 1.44
SDC1-203ENST00000403076 CAMTA1Q9Y6Y1 1673 aa24.02■■□□□ 1.44
SDC1-203ENST00000403076 LRP6O75581 1613 aa24■■□□□ 1.43
SDC1-203ENST00000403076 NBPF6Q5VWK0 638 aa24■■□□□ 1.43
SDC1-203ENST00000403076 SULT6B1Q6IMI4 303 aa24■■□□□ 1.43
SDC1-203ENST00000403076 NBPF4Q96M43 638 aa24■■□□□ 1.43
SDC1-203ENST00000403076 PNNQ9H307 717 aaKnown RBP24■■□□□ 1.43
SDC1-203ENST00000403076 LMO7Q8WWI1 1683 aa23.99■■□□□ 1.43
SDC1-203ENST00000403076 TOM1L2Q6ZVM7 507 aa23.99■■□□□ 1.43
SDC1-203ENST00000403076 IGSF1Q8N6C5 1336 aa23.98■■□□□ 1.43
SDC1-203ENST00000403076 FCHSD2O94868 740 aa23.98■■□□□ 1.43
SDC1-203ENST00000403076 CCDC146Q8IYE0 955 aa23.98■■□□□ 1.43
SDC1-203ENST00000403076 USHBP1Q8N6Y0 703 aa23.98■■□□□ 1.43
SDC1-203ENST00000403076 WDR17Q8IZU2 1322 aa23.97■■□□□ 1.43
SDC1-203ENST00000403076 COL5A2P05997 1499 aaPredicted RBP23.97■■□□□ 1.43
SDC1-203ENST00000403076 NEFMP07197 916 aa23.96■■□□□ 1.43
SDC1-203ENST00000403076 AEBP1Q8IUX7 1158 aa23.96■■□□□ 1.43
SDC1-203ENST00000403076 YTHDC1Q96MU7 727 aaKnown RBP23.96■■□□□ 1.43
SDC1-203ENST00000403076 PRKAR2BP31323 418 aa23.95■■□□□ 1.43
SDC1-203ENST00000403076 LARP1Q6PKG0 1096 aaKnown RBP23.95■■□□□ 1.43
SDC1-203ENST00000403076 RSPH6AQ9H0K4 717 aa23.94■■□□□ 1.42
SDC1-203ENST00000403076 RUNDC1Q96C34 613 aa23.94■■□□□ 1.42
SDC1-203ENST00000403076 PLCH1Q4KWH8 1693 aa23.93■■□□□ 1.42
SDC1-203ENST00000403076 MAPK8IP3Q9UPT6 1336 aa23.93■■□□□ 1.42
SDC1-203ENST00000403076 RGPD1P0DJD0 1748 aa23.92■■□□□ 1.42
SDC1-203ENST00000403076 SLIT2O94813 1529 aa23.92■■□□□ 1.42
SDC1-203ENST00000403076 UNC5CLQ8IV45 518 aa23.91■■□□□ 1.42
SDC1-203ENST00000403076 RGPD2P0DJD1 1756 aa23.91■■□□□ 1.42
SDC1-203ENST00000403076 FNBP4Q8N3X1 1017 aaPredicted RBP23.9■■□□□ 1.42
SDC1-203ENST00000403076 CARD10Q9BWT7 1032 aa23.9■■□□□ 1.42
SDC1-203ENST00000403076 USP35Q9P2H5 1018 aa23.9■■□□□ 1.42
SDC1-203ENST00000403076 USP21Q9UK80 565 aa23.9■■□□□ 1.42
SDC1-203ENST00000403076 CCDC9Q9Y3X0 531 aaKnown RBP23.9■■□□□ 1.42
SDC1-203ENST00000403076 FAM208AQ9UK61 1670 aaKnown RBP23.9■■□□□ 1.42
SDC1-203ENST00000403076 SENP3-EIF4A1A0A087X0R7 540 aa23.89■■□□□ 1.42
SDC1-203ENST00000403076 HNRNPUQ00839 825 aaKnown RBP eCLIP23.89■■□□□ 1.42
SDC1-203ENST00000403076 KDRP35968 1356 aa23.89■■□□□ 1.42
SDC1-203ENST00000403076 CRB1P82279 1406 aa23.89■■□□□ 1.42
SDC1-203ENST00000403076 PLEKHF1Q96S99 279 aa23.89■■□□□ 1.41
SDC1-203ENST00000403076 AFF2P51816 1311 aa23.89■■□□□ 1.41
SDC1-203ENST00000403076 APAF1O14727 1248 aa23.88■■□□□ 1.41
SDC1-203ENST00000403076 RAPGEF4Q8WZA2 1011 aa23.88■■□□□ 1.41
SDC1-203ENST00000403076 NWD2Q9ULI1 1742 aa23.88■■□□□ 1.41
SDC1-203ENST00000403076 TCP11L2Q8N4U5 519 aa23.86■■□□□ 1.41
SDC1-203ENST00000403076 TATP17735 454 aaPredicted RBP23.85■■□□□ 1.41
SDC1-203ENST00000403076 PHACTR3Q96KR7 559 aa23.85■■□□□ 1.41
SDC1-203ENST00000403076 BCL9LQ86UU0 1499 aa23.85■■□□□ 1.41
SDC1-203ENST00000403076 NEUROD2Q15784 382 aa23.84■■□□□ 1.41
SDC1-203ENST00000403076 SALL2Q9Y467 1007 aaPredicted RBP23.84■■□□□ 1.41
SDC1-203ENST00000403076 NRAPQ86VF7 1730 aa23.84■■□□□ 1.41
SDC1-203ENST00000403076 NCAPD2Q15021 1401 aa23.84■■□□□ 1.41
SDC1-203ENST00000403076 VPS72Q15906 364 aa23.83■■□□□ 1.41
SDC1-203ENST00000403076 RRP7AQ9Y3A4 280 aaKnown RBP23.83■■□□□ 1.41
SDC1-203ENST00000403076 SPATA31A1Q5TZJ5 1347 aa23.81■■□□□ 1.4
SDC1-203ENST00000403076 SPATA31A5Q5VU36 1347 aa23.81■■□□□ 1.4
SDC1-203ENST00000403076 SPATA31A7Q8IWB4 1347 aa23.81■■□□□ 1.4
SDC1-203ENST00000403076 IL2RBP14784 551 aa23.81■■□□□ 1.4
SDC1-203ENST00000403076 PLEKHO1Q53GL0 409 aaPredicted RBP23.81■■□□□ 1.4
SDC1-203ENST00000403076 TMPOP42166 694 aaKnown RBP23.79■■□□□ 1.4
SDC1-203ENST00000403076 NFE2L2Q16236 605 aa23.79■■□□□ 1.4
SDC1-203ENST00000403076 AMOTQ4VCS5 1084 aa23.79■■□□□ 1.4
SDC1-203ENST00000403076 RIPK4P57078 832 aa23.79■■□□□ 1.4
SDC1-203ENST00000403076 MTHFSDQ2M296 383 aaKnown RBP23.79■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms