RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 ZBTB7CA1YPR0 619 aa18.9■□□□□ 0.62
VCX3A-202ENST00000398729 SPON1Q9HCB6 807 aa18.9■□□□□ 0.62
VCX3A-202ENST00000398729 UTRNP46939 3433 aa18.9■□□□□ 0.62
VCX3A-202ENST00000398729 CLSPNQ9HAW4 1339 aa18.9■□□□□ 0.62
VCX3A-202ENST00000398729 PTF1AQ7RTS3 328 aa18.89■□□□□ 0.61
VCX3A-202ENST00000398729 HDGFL2Q7Z4V5 671 aaPredicted RBP18.89■□□□□ 0.61
VCX3A-202ENST00000398729 KCNH5Q8NCM2 988 aa18.89■□□□□ 0.61
VCX3A-202ENST00000398729 AATKQ6ZMQ8 1374 aa18.89■□□□□ 0.61
VCX3A-202ENST00000398729 TESK2Q96S53 571 aa18.88■□□□□ 0.61
VCX3A-202ENST00000398729 SLC12A5Q9H2X9 1139 aa18.88■□□□□ 0.61
VCX3A-202ENST00000398729 TIMELESSQ9UNS1 1208 aa18.88■□□□□ 0.61
VCX3A-202ENST00000398729 PLSCR1O15162 318 aa18.87■□□□□ 0.61
VCX3A-202ENST00000398729 COL5A2P05997 1499 aaPredicted RBP18.87■□□□□ 0.61
VCX3A-202ENST00000398729 PROM2Q8N271 834 aa18.87■□□□□ 0.61
VCX3A-202ENST00000398729 CD163L1Q9NR16 1453 aa18.87■□□□□ 0.61
VCX3A-202ENST00000398729 TERF2IPQ9NYB0 399 aa18.87■□□□□ 0.61
VCX3A-202ENST00000398729 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.86■□□□□ 0.61
VCX3A-202ENST00000398729 SOX12O15370 315 aa18.85■□□□□ 0.61
VCX3A-202ENST00000398729 PDGFDQ9GZP0 370 aaPredicted RBP18.85■□□□□ 0.61
VCX3A-202ENST00000398729 PPP1R1BQ9UD71 204 aaPredicted RBP18.85■□□□□ 0.61
VCX3A-202ENST00000398729 USP47Q96K76 1375 aa18.84■□□□□ 0.61
VCX3A-202ENST00000398729 NINLQ9Y2I6 1382 aa18.84■□□□□ 0.61
VCX3A-202ENST00000398729 C11orf95C9JLR9 678 aaPredicted RBP18.84■□□□□ 0.61
VCX3A-202ENST00000398729 ARHGEF25Q86VW2 580 aa18.84■□□□□ 0.61
VCX3A-202ENST00000398729 ANO8Q9HCE9 1232 aaPredicted RBP18.84■□□□□ 0.61
VCX3A-202ENST00000398729 AXIN2Q9Y2T1 843 aa18.84■□□□□ 0.61
VCX3A-202ENST00000398729 CRB1P82279 1406 aa18.83■□□□□ 0.61
VCX3A-202ENST00000398729 EDC4Q6P2E9 1401 aaKnown RBP18.83■□□□□ 0.61
VCX3A-202ENST00000398729 USP31Q70CQ4 1352 aa18.83■□□□□ 0.61
VCX3A-202ENST00000398729 COL18A1P39060 1754 aa18.83■□□□□ 0.6
VCX3A-202ENST00000398729 PARP4Q9UKK3 1724 aaKnown RBP18.83■□□□□ 0.6
VCX3A-202ENST00000398729 A0A1W2PP64 1363 aa18.82■□□□□ 0.6
VCX3A-202ENST00000398729 MARCH10Q8NA82 808 aaPredicted RBP18.82■□□□□ 0.6
VCX3A-202ENST00000398729 BCL11BQ9C0K0 894 aaPredicted RBP18.82■□□□□ 0.6
VCX3A-202ENST00000398729 PEAK1Q9H792 1746 aa18.82■□□□□ 0.6
VCX3A-202ENST00000398729 NFAT5O94916 1531 aa18.81■□□□□ 0.6
VCX3A-202ENST00000398729 TMF1P82094 1093 aa18.81■□□□□ 0.6
VCX3A-202ENST00000398729 DDB1Q16531 1140 aa18.81■□□□□ 0.6
VCX3A-202ENST00000398729 NME9Q86XW9 330 aa18.81■□□□□ 0.6
VCX3A-202ENST00000398729 USP54Q70EL1 1684 aa18.81■□□□□ 0.6
VCX3A-202ENST00000398729 TOM1L2Q6ZVM7 507 aa18.8■□□□□ 0.6
VCX3A-202ENST00000398729 OVOS2A0A0G2JMS6 1433 aa18.8■□□□□ 0.6
VCX3A-202ENST00000398729 OVOS2A0A0J9YW53 1432 aa18.8■□□□□ 0.6
VCX3A-202ENST00000398729 OVOS2Q6IE36 1432 aa18.8■□□□□ 0.6
VCX3A-202ENST00000398729 SBF2Q86WG5 1849 aa18.79■□□□□ 0.6
VCX3A-202ENST00000398729 RGPD5Q99666 1765 aa18.78■□□□□ 0.6
VCX3A-202ENST00000398729 WDR17Q8IZU2 1322 aa18.78■□□□□ 0.6
VCX3A-202ENST00000398729 PTGER2P43116 358 aa18.78■□□□□ 0.6
VCX3A-202ENST00000398729 CSB-PGBD3P0DP91 1061 aa18.77■□□□□ 0.6
VCX3A-202ENST00000398729 ABCC6O95255 1503 aa18.77■□□□□ 0.6
VCX3A-202ENST00000398729 DCAF8L1A6NGE4 600 aa18.76■□□□□ 0.59
VCX3A-202ENST00000398729 ZBTB7AO95365 584 aa18.76■□□□□ 0.59
VCX3A-202ENST00000398729 CDCA8Q53HL2 280 aa18.76■□□□□ 0.59
VCX3A-202ENST00000398729 CCER1Q8TC90 406 aaPredicted RBP18.76■□□□□ 0.59
VCX3A-202ENST00000398729 ATF5Q9Y2D1 282 aaPredicted RBP18.75■□□□□ 0.59
VCX3A-202ENST00000398729 ANKRD36BQ8N2N9 1353 aa18.74■□□□□ 0.59
VCX3A-202ENST00000398729 BCL9O00512 1426 aa18.74■□□□□ 0.59
VCX3A-202ENST00000398729 LTN1O94822 1766 aa18.73■□□□□ 0.59
VCX3A-202ENST00000398729 TXNRD1Q16881 649 aa18.73■□□□□ 0.59
VCX3A-202ENST00000398729 CDCA7Q9BWT1 371 aaPredicted RBP18.73■□□□□ 0.59
VCX3A-202ENST00000398729 CARD10Q9BWT7 1032 aa18.73■□□□□ 0.59
VCX3A-202ENST00000398729 LRRC37A3O60309 1634 aa18.73■□□□□ 0.59
VCX3A-202ENST00000398729 CASZ1Q86V15 1759 aa18.73■□□□□ 0.59
VCX3A-202ENST00000398729 RGPD3A6NKT7 1758 aaPredicted RBP18.72■□□□□ 0.59
VCX3A-202ENST00000398729 RGPD4Q7Z3J3 1758 aa18.72■□□□□ 0.59
VCX3A-202ENST00000398729 WNK3Q9BYP7 1800 aa18.72■□□□□ 0.59
VCX3A-202ENST00000398729 SLC15A2Q16348 729 aa18.71■□□□□ 0.59
VCX3A-202ENST00000398729 COG3Q96JB2 828 aa18.71■□□□□ 0.59
VCX3A-202ENST00000398729 CCDC7Q96M83 1385 aa18.7■□□□□ 0.58
VCX3A-202ENST00000398729 EXOC5O00471 708 aa18.7■□□□□ 0.58
VCX3A-202ENST00000398729 SGIP1Q9BQI5 828 aa18.7■□□□□ 0.58
VCX3A-202ENST00000398729 SYT17Q9BSW7 474 aa18.7■□□□□ 0.58
VCX3A-202ENST00000398729 ERBB3P21860 1342 aa18.7■□□□□ 0.58
VCX3A-202ENST00000398729 ZNF784Q8NCA9 323 aaPredicted RBP18.69■□□□□ 0.58
VCX3A-202ENST00000398729 STK32BQ9NY57 414 aa18.68■□□□□ 0.58
VCX3A-202ENST00000398729 FHDC1Q9C0D6 1143 aaPredicted RBP18.67■□□□□ 0.58
VCX3A-202ENST00000398729 NLRP2Q9NX02 1062 aa18.67■□□□□ 0.58
VCX3A-202ENST00000398729 ANKRD24Q8TF21 1146 aa18.66■□□□□ 0.58
VCX3A-202ENST00000398729 IP6K1Q92551 441 aa18.65■□□□□ 0.58
VCX3A-202ENST00000398729 MYOM1P52179 1685 aa18.64■□□□□ 0.57
VCX3A-202ENST00000398729 FYB1O15117 783 aa18.64■□□□□ 0.57
VCX3A-202ENST00000398729 MTFR1LQ9H019 292 aa18.64■□□□□ 0.57
VCX3A-202ENST00000398729 AMPHP49418 695 aa18.63■□□□□ 0.57
VCX3A-202ENST00000398729 ACSBG1Q96GR2 724 aa18.63■□□□□ 0.57
VCX3A-202ENST00000398729 GGNBP2Q9H3C7 697 aa18.63■□□□□ 0.57
VCX3A-202ENST00000398729 MAP3K19Q56UN5 1328 aa18.63■□□□□ 0.57
VCX3A-202ENST00000398729 EIF4G2P78344 907 aaKnown RBP eCLIP18.62■□□□□ 0.57
VCX3A-202ENST00000398729 GOLGB1Q14789 3259 aaKnown RBP18.62■□□□□ 0.57
VCX3A-202ENST00000398729 KIF20BQ96Q89 1820 aa18.61■□□□□ 0.57
VCX3A-202ENST00000398729 TNS2Q63HR2 1409 aa18.61■□□□□ 0.57
VCX3A-202ENST00000398729 IL2RBP14784 551 aa18.61■□□□□ 0.57
VCX3A-202ENST00000398729 FAM208AQ9UK61 1670 aaKnown RBP18.6■□□□□ 0.57
VCX3A-202ENST00000398729 FBLN1P23142 703 aa18.6■□□□□ 0.57
VCX3A-202ENST00000398729 HOXC9P31274 260 aa18.6■□□□□ 0.57
VCX3A-202ENST00000398729 LTV1Q96GA3 475 aaPredicted RBP18.6■□□□□ 0.57
VCX3A-202ENST00000398729 ARXQ96QS3 562 aa18.59■□□□□ 0.57
VCX3A-202ENST00000398729 LRRC4BQ9NT99 713 aa18.59■□□□□ 0.57
VCX3A-202ENST00000398729 NSD3Q9BZ95 1437 aa18.58■□□□□ 0.57
VCX3A-202ENST00000398729 RTL1A6NKG5 1358 aa18.58■□□□□ 0.57
VCX3A-202ENST00000398729 RRS1Q15050 365 aaKnown RBP18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms