RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 CCDC94Q9BW85 323 aaPredicted RBP10.24□□□□□ -0.77
LIG3-202ENST00000378526 ZC4H2Q9NQZ6 224 aa10.24□□□□□ -0.77
LIG3-202ENST00000378526 WHAMMP3Q1A5X7 153 aa10.24□□□□□ -0.77
LIG3-202ENST00000378526 MICALL1Q8N3F8 863 aa10.24□□□□□ -0.77
LIG3-202ENST00000378526 OTUD6BQ8N6M0 293 aa10.24□□□□□ -0.77
LIG3-202ENST00000378526 CCDC38Q502W7 563 aa10.24□□□□□ -0.77
LIG3-202ENST00000378526 CCDC113Q9H0I3 377 aa10.24□□□□□ -0.77
LIG3-202ENST00000378526 STMN4Q9H169 189 aaPredicted RBP10.24□□□□□ -0.77
LIG3-202ENST00000378526 TRIM35Q9UPQ4 493 aa10.24□□□□□ -0.77
LIG3-202ENST00000378526 A6NNZ2 444 aa10.24□□□□□ -0.77
LIG3-202ENST00000378526 TUBB8Q3ZCM7 444 aa10.24□□□□□ -0.77
LIG3-202ENST00000378526 NLRP13Q86W25 1043 aa10.24□□□□□ -0.77
LIG3-202ENST00000378526 RRP7BPQ9NSQ0 103 aa10.24□□□□□ -0.77
LIG3-202ENST00000378526 RGL3Q3MIN7 710 aa10.24□□□□□ -0.77
LIG3-202ENST00000378526 AIMP1Q12904 312 aaKnown RBP10.24□□□□□ -0.77
LIG3-202ENST00000378526 VCXQ9H320 206 aa10.24□□□□□ -0.77
LIG3-202ENST00000378526 FAM114A2Q9NRY5 505 aa10.24□□□□□ -0.77
LIG3-202ENST00000378526 MKRN1Q9UHC7 482 aaKnown RBP10.24□□□□□ -0.77
LIG3-202ENST00000378526 HSP90AB4PQ58FF6 505 aa10.23□□□□□ -0.77
LIG3-202ENST00000378526 DBN1Q16643 649 aa10.23□□□□□ -0.77
LIG3-202ENST00000378526 CCDC121Q6ZUS5 278 aa10.23□□□□□ -0.77
LIG3-202ENST00000378526 FAM177A1Q8N128 213 aaPredicted RBP10.23□□□□□ -0.77
LIG3-202ENST00000378526 KIF15Q9NS87 1388 aa10.23□□□□□ -0.77
LIG3-202ENST00000378526 ZKSCAN2Q63HK3 967 aa10.23□□□□□ -0.77
LIG3-202ENST00000378526 ANAPC4Q9UJX5 808 aa10.23□□□□□ -0.77
LIG3-202ENST00000378526 SFPQP23246 707 aaKnown RBP eCLIP10.23□□□□□ -0.77
LIG3-202ENST00000378526 CWC25Q9NXE8 425 aaPredicted RBP10.23□□□□□ -0.77
LIG3-202ENST00000378526 WDR33Q9C0J8 1336 aaKnown RBP10.23□□□□□ -0.77
LIG3-202ENST00000378526 NPM1P06748 294 aaKnown RBP eCLIP10.23□□□□□ -0.77
LIG3-202ENST00000378526 B4GALNT4Q76KP1 1039 aa10.23□□□□□ -0.77
LIG3-202ENST00000378526 NFXL1Q6ZNB6 911 aa10.23□□□□□ -0.77
LIG3-202ENST00000378526 CCDC110Q8TBZ0 833 aa10.23□□□□□ -0.77
LIG3-202ENST00000378526 TTC14Q96N46 770 aa10.23□□□□□ -0.77
LIG3-202ENST00000378526 ARFGAP3Q9NP61 516 aa10.23□□□□□ -0.77
LIG3-202ENST00000378526 UBE4AQ14139 1066 aa10.23□□□□□ -0.77
LIG3-202ENST00000378526 WWC2Q6AWC2 1192 aa10.23□□□□□ -0.77
LIG3-202ENST00000378526 WDR63Q8IWG1 891 aa10.23□□□□□ -0.77
LIG3-202ENST00000378526 CEP57L1Q8IYX8 460 aa10.23□□□□□ -0.77
LIG3-202ENST00000378526 CACNA2D3Q8IZS8 1091 aa10.23□□□□□ -0.77
LIG3-202ENST00000378526 VCX3BQ9H321 246 aa10.23□□□□□ -0.77
LIG3-202ENST00000378526 RFC1P35251 1148 aaPredicted RBP10.22□□□□□ -0.77
LIG3-202ENST00000378526 BRPF1P55201 1214 aaPredicted RBP10.22□□□□□ -0.77
LIG3-202ENST00000378526 ATP11AP98196 1134 aa10.22□□□□□ -0.77
LIG3-202ENST00000378526 HSF2BPO75031 334 aa10.22□□□□□ -0.77
LIG3-202ENST00000378526 U2AF1L5P0DN76 240 aaPredicted RBP10.22□□□□□ -0.77
LIG3-202ENST00000378526 U2AF1Q01081 240 aaKnown RBP eCLIP10.22□□□□□ -0.77
LIG3-202ENST00000378526 POTEDQ86YR6 584 aa10.22□□□□□ -0.77
LIG3-202ENST00000378526 GSDMDP57764 484 aa10.22□□□□□ -0.77
LIG3-202ENST00000378526 SPECC1Q5M775 1068 aa10.22□□□□□ -0.77
LIG3-202ENST00000378526 ERC2O15083 957 aa10.22□□□□□ -0.77
LIG3-202ENST00000378526 PAFAH1B1P43034 410 aa10.22□□□□□ -0.77
LIG3-202ENST00000378526 TSPYL2Q9H2G4 693 aaPredicted RBP10.22□□□□□ -0.77
LIG3-202ENST00000378526 FRAT2O75474 233 aaPredicted RBP10.22□□□□□ -0.77
LIG3-202ENST00000378526 MAP2K2P36507 400 aa10.22□□□□□ -0.77
LIG3-202ENST00000378526 CHMP2AO43633 222 aa10.21□□□□□ -0.77
LIG3-202ENST00000378526 HOOK3Q86VS8 718 aa10.21□□□□□ -0.77
LIG3-202ENST00000378526 LACTBP83111 547 aaPredicted RBP10.21□□□□□ -0.77
LIG3-202ENST00000378526 FSD2A1L4K1 749 aa10.21□□□□□ -0.77
LIG3-202ENST00000378526 MAP7Q14244 749 aa10.21□□□□□ -0.77
LIG3-202ENST00000378526 GBP1P32455 592 aa10.21□□□□□ -0.78
LIG3-202ENST00000378526 RPUSD2Q8IZ73 545 aaKnown RBP10.21□□□□□ -0.78
LIG3-202ENST00000378526 CDK5RAP3Q96JB5 506 aa10.21□□□□□ -0.78
LIG3-202ENST00000378526 SCLT1Q96NL6 688 aa10.21□□□□□ -0.78
LIG3-202ENST00000378526 HYPKQ9NX55 129 aa10.21□□□□□ -0.78
LIG3-202ENST00000378526 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.21□□□□□ -0.78
LIG3-202ENST00000378526 CASQ2O14958 399 aaPredicted RBP10.21□□□□□ -0.78
LIG3-202ENST00000378526 RNF8O76064 485 aa10.2□□□□□ -0.78
LIG3-202ENST00000378526 TUBB4AP04350 444 aa10.2□□□□□ -0.78
LIG3-202ENST00000378526 SPA17Q15506 151 aa10.2□□□□□ -0.78
LIG3-202ENST00000378526 ANAPC15P60006 121 aa10.2□□□□□ -0.78
LIG3-202ENST00000378526 MAP3K9P80192 1104 aa10.2□□□□□ -0.78
LIG3-202ENST00000378526 ANKRD1Q15327 319 aa10.2□□□□□ -0.78
LIG3-202ENST00000378526 IFT74Q96LB3 600 aa10.2□□□□□ -0.78
LIG3-202ENST00000378526 OPA1O60313 960 aa10.2□□□□□ -0.78
LIG3-202ENST00000378526 CLNS1AP54105 237 aaKnown RBP10.2□□□□□ -0.78
LIG3-202ENST00000378526 KRT85P78386 507 aa10.2□□□□□ -0.78
LIG3-202ENST00000378526 SLC4A10Q6U841 1118 aa10.2□□□□□ -0.78
LIG3-202ENST00000378526 HDGFL2Q7Z4V5 671 aaPredicted RBP10.2□□□□□ -0.78
LIG3-202ENST00000378526 CCDC171Q6TFL3 1326 aa10.2□□□□□ -0.78
LIG3-202ENST00000378526 PDCD7Q8N8D1 485 aaKnown RBP10.2□□□□□ -0.78
LIG3-202ENST00000378526 RALYLQ86SE5 291 aaKnown RBP10.2□□□□□ -0.78
LIG3-202ENST00000378526 RSPH14Q9UHP6 348 aa10.2□□□□□ -0.78
LIG3-202ENST00000378526 CEP162Q5TB80 1403 aa10.2□□□□□ -0.78
LIG3-202ENST00000378526 ZCCHC6Q5VYS8 1495 aaKnown RBP10.2□□□□□ -0.78
LIG3-202ENST00000378526 NEBLO76041 1014 aa10.2□□□□□ -0.78
LIG3-202ENST00000378526 TSNAXIP1Q2TAA8 658 aa10.2□□□□□ -0.78
LIG3-202ENST00000378526 G3V3G9 751 aa10.19□□□□□ -0.78
LIG3-202ENST00000378526 DCAF8Q5TAQ9 597 aa10.19□□□□□ -0.78
LIG3-202ENST00000378526 CDC45O75419 566 aa10.19□□□□□ -0.78
LIG3-202ENST00000378526 TUBBP07437 444 aa10.19□□□□□ -0.78
LIG3-202ENST00000378526 EHBP1Q8NDI1 1231 aa10.19□□□□□ -0.78
LIG3-202ENST00000378526 CTDP1Q9Y5B0 961 aaPredicted RBP10.19□□□□□ -0.78
LIG3-202ENST00000378526 GSTTP1A0A1W2PQM5 241 aa10.19□□□□□ -0.78
LIG3-202ENST00000378526 MIER3Q7Z3K6 550 aa10.19□□□□□ -0.78
LIG3-202ENST00000378526 CTAGE6Q86UF2 777 aa10.19□□□□□ -0.78
LIG3-202ENST00000378526 MAP4K4O95819 1239 aaPredicted RBP10.19□□□□□ -0.78
LIG3-202ENST00000378526 POTEJP0CG39 1038 aa10.19□□□□□ -0.78
LIG3-202ENST00000378526 VPS36Q86VN1 386 aa10.19□□□□□ -0.78
LIG3-202ENST00000378526 SATB2Q9UPW6 733 aa10.18□□□□□ -0.78
LIG3-202ENST00000378526 HIP1O00291 1037 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms