RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 SND1Q7KZF4 910 aaKnown RBP eCLIP11.39□□□□□ -0.59
UBR4-201ENST00000375218 CAMSAP1Q5T5Y3 1602 aa11.39□□□□□ -0.59
UBR4-201ENST00000375218 U2SURPO15042 1029 aaKnown RBP11.39□□□□□ -0.59
UBR4-201ENST00000375218 POLA2Q14181 598 aa11.39□□□□□ -0.59
UBR4-201ENST00000375218 DNAJC14Q6Y2X3 702 aaPredicted RBP11.39□□□□□ -0.59
UBR4-201ENST00000375218 OTUD6BQ8N6M0 293 aa11.39□□□□□ -0.59
UBR4-201ENST00000375218 RBM46Q8TBY0 533 aaKnown RBP11.39□□□□□ -0.59
UBR4-201ENST00000375218 AK7Q96M32 723 aa11.39□□□□□ -0.59
UBR4-201ENST00000375218 EFCAB6Q5THR3 1501 aa11.39□□□□□ -0.59
UBR4-201ENST00000375218 HMGB1P1B2RPK0 211 aaPredicted RBP11.38□□□□□ -0.59
UBR4-201ENST00000375218 NRDCO43847 1150 aa11.38□□□□□ -0.59
UBR4-201ENST00000375218 SDR16C5Q8N3Y7 309 aa11.38□□□□□ -0.59
UBR4-201ENST00000375218 SBNO2Q9Y2G9 1366 aa11.38□□□□□ -0.59
UBR4-201ENST00000375218 CCDC194A0A1B0GVG4 234 aa11.38□□□□□ -0.59
UBR4-201ENST00000375218 CALRP27797 417 aaKnown RBP11.38□□□□□ -0.59
UBR4-201ENST00000375218 PTPRTO14522 1441 aa11.37□□□□□ -0.59
UBR4-201ENST00000375218 MAGEC2Q9UBF1 373 aaPredicted RBP11.37□□□□□ -0.59
UBR4-201ENST00000375218 hCG_2014768A0A024R1R8 64 aa11.37□□□□□ -0.59
UBR4-201ENST00000375218 CSB-PGBD3P0DP91 1061 aa11.37□□□□□ -0.59
UBR4-201ENST00000375218 C11orf96Q7Z7L8 435 aa11.37□□□□□ -0.59
UBR4-201ENST00000375218 PLEKHG3A1L390 1219 aa11.37□□□□□ -0.59
UBR4-201ENST00000375218 UBXN4Q92575 508 aa11.37□□□□□ -0.59
UBR4-201ENST00000375218 TSPAN18Q96SJ8 248 aa11.37□□□□□ -0.59
UBR4-201ENST00000375218 CARD10Q9BWT7 1032 aa11.37□□□□□ -0.59
UBR4-201ENST00000375218 TRPM2O94759 1503 aa11.36□□□□□ -0.59
UBR4-201ENST00000375218 HDAC1Q13547 482 aaPredicted RBP11.36□□□□□ -0.59
UBR4-201ENST00000375218 MCM6Q14566 821 aa11.36□□□□□ -0.59
UBR4-201ENST00000375218 VGFO15240 615 aaPredicted RBP11.36□□□□□ -0.59
UBR4-201ENST00000375218 ERBINQ96RT1 1412 aa11.36□□□□□ -0.59
UBR4-201ENST00000375218 LMTK2Q8IWU2 1503 aa11.36□□□□□ -0.59
UBR4-201ENST00000375218 ADGRL1O94910 1474 aa11.36□□□□□ -0.59
UBR4-201ENST00000375218 PSEN1P49768 467 aa11.35□□□□□ -0.59
UBR4-201ENST00000375218 APLP1P51693 650 aa11.35□□□□□ -0.59
UBR4-201ENST00000375218 SMC5Q8IY18 1101 aa11.35□□□□□ -0.59
UBR4-201ENST00000375218 PRDM4Q9UKN5 801 aa11.35□□□□□ -0.59
UBR4-201ENST00000375218 UHRF1BP1Q6BDS2 1440 aa11.35□□□□□ -0.59
UBR4-201ENST00000375218 NAALADL2Q58DX5 795 aa11.35□□□□□ -0.59
UBR4-201ENST00000375218 TRIM44Q96DX7 344 aaPredicted RBP11.35□□□□□ -0.59
UBR4-201ENST00000375218 RTEL1-TNFRSF6BF6WH68 1400 aa11.35□□□□□ -0.59
UBR4-201ENST00000375218 CLEC4GQ6UXB4 293 aa11.35□□□□□ -0.59
UBR4-201ENST00000375218 CADPS2Q86UW7 1296 aa11.35□□□□□ -0.59
UBR4-201ENST00000375218 RPGRIP1LQ68CZ1 1315 aa11.35□□□□□ -0.59
UBR4-201ENST00000375218 MLH3Q9UHC1 1453 aa11.34□□□□□ -0.59
UBR4-201ENST00000375218 FAN1Q9Y2M0 1017 aa11.34□□□□□ -0.59
UBR4-201ENST00000375218 NRXN3Q9Y4C0 1643 aa11.34□□□□□ -0.59
UBR4-201ENST00000375218 TTC30BQ8N4P2 665 aa11.34□□□□□ -0.59
UBR4-201ENST00000375218 PROCA1Q8NCQ7 364 aaPredicted RBP11.34□□□□□ -0.59
UBR4-201ENST00000375218 ASXL1Q8IXJ9 1541 aa11.34□□□□□ -0.59
UBR4-201ENST00000375218 CCDC146Q8IYE0 955 aa11.34□□□□□ -0.59
UBR4-201ENST00000375218 RNF25Q96BH1 459 aaPredicted RBP11.34□□□□□ -0.59
UBR4-201ENST00000375218 CHPF2Q9P2E5 772 aa11.34□□□□□ -0.59
UBR4-201ENST00000375218 MCCD1P59942 119 aaPredicted RBP11.33□□□□□ -0.6
UBR4-201ENST00000375218 HSP90AB3PQ58FF7 597 aa11.33□□□□□ -0.6
UBR4-201ENST00000375218 ZCRB1Q8TBF4 217 aaKnown RBP11.33□□□□□ -0.6
UBR4-201ENST00000375218 ARHGEF1Q92888 912 aaKnown RBP11.33□□□□□ -0.6
UBR4-201ENST00000375218 PLSCR2Q9NRY7 297 aa11.33□□□□□ -0.6
UBR4-201ENST00000375218 TPX2Q9ULW0 747 aaKnown RBP11.33□□□□□ -0.6
UBR4-201ENST00000375218 LAMC1P11047 1609 aa11.33□□□□□ -0.6
UBR4-201ENST00000375218 GOLGB1Q14789 3259 aaKnown RBP11.33□□□□□ -0.6
UBR4-201ENST00000375218 TERF1P54274 439 aa11.33□□□□□ -0.6
UBR4-201ENST00000375218 MIER1Q8N108 512 aa11.33□□□□□ -0.6
UBR4-201ENST00000375218 ISY1Q9ULR0 285 aaKnown RBP11.33□□□□□ -0.6
UBR4-201ENST00000375218 PREX1Q8TCU6 1659 aa11.33□□□□□ -0.6
UBR4-201ENST00000375218 BDNFP23560 247 aa11.33□□□□□ -0.6
UBR4-201ENST00000375218 DDX46Q7L014 1031 aaKnown RBP11.33□□□□□ -0.6
UBR4-201ENST00000375218 NBPF9Q3BBW0 867 aa11.32□□□□□ -0.6
UBR4-201ENST00000375218 L3MBTL2Q969R5 705 aa11.32□□□□□ -0.6
UBR4-201ENST00000375218 CALD1Q05682 793 aaKnown RBP11.32□□□□□ -0.6
UBR4-201ENST00000375218 CEP120Q8N960 986 aa11.32□□□□□ -0.6
UBR4-201ENST00000375218 ABCC3O15438 1527 aa11.32□□□□□ -0.6
UBR4-201ENST00000375218 CT47B1P0C2W7 299 aaPredicted RBP11.32□□□□□ -0.6
UBR4-201ENST00000375218 MAMSTRQ6ZN01 415 aa11.32□□□□□ -0.6
UBR4-201ENST00000375218 GNL3LQ9NVN8 582 aaKnown RBP11.32□□□□□ -0.6
UBR4-201ENST00000375218 NRXN1Q9ULB1 1477 aa11.32□□□□□ -0.6
UBR4-201ENST00000375218 SCAPERQ9BY12 1400 aa11.31□□□□□ -0.6
UBR4-201ENST00000375218 NEURL4Q96JN8 1562 aa11.31□□□□□ -0.6
UBR4-201ENST00000375218 TMEM131LA2VDJ0 1609 aa11.31□□□□□ -0.6
UBR4-201ENST00000375218 TCERG1O14776 1098 aaKnown RBP11.31□□□□□ -0.6
UBR4-201ENST00000375218 MS4A1P11836 297 aa11.31□□□□□ -0.6
UBR4-201ENST00000375218 IGBP1P78318 339 aa11.31□□□□□ -0.6
UBR4-201ENST00000375218 TMEM51Q9NW97 253 aa11.31□□□□□ -0.6
UBR4-201ENST00000375218 CSPP1Q1MSJ5 1256 aa11.3□□□□□ -0.6
UBR4-201ENST00000375218 CFAP74Q9C0B2 1584 aa11.3□□□□□ -0.6
UBR4-201ENST00000375218 ADGRB3O60242 1522 aa11.3□□□□□ -0.6
UBR4-201ENST00000375218 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.3□□□□□ -0.6
UBR4-201ENST00000375218 ARHGEF10LQ9HCE6 1279 aa11.3□□□□□ -0.6
UBR4-201ENST00000375218 WASHC2AQ641Q2 1341 aa11.3□□□□□ -0.6
UBR4-201ENST00000375218 GIPC2Q8TF65 315 aa11.3□□□□□ -0.6
UBR4-201ENST00000375218 ADGRB1O14514 1584 aa11.29□□□□□ -0.6
UBR4-201ENST00000375218 REREQ9P2R6 1566 aa11.29□□□□□ -0.6
UBR4-201ENST00000375218 HELBQ8NG08 1087 aaPredicted RBP11.29□□□□□ -0.6
UBR4-201ENST00000375218 FBXO9Q9UK97 447 aaPredicted RBP11.29□□□□□ -0.6
UBR4-201ENST00000375218 PRR12Q9ULL5 1215 aa11.29□□□□□ -0.6
UBR4-201ENST00000375218 TRIM66O15016 1216 aa11.29□□□□□ -0.6
UBR4-201ENST00000375218 CD109Q6YHK3 1445 aa11.29□□□□□ -0.6
UBR4-201ENST00000375218 RBM47A0AV96 593 aaKnown RBP11.29□□□□□ -0.6
UBR4-201ENST00000375218 STK25O00506 426 aa11.29□□□□□ -0.6
UBR4-201ENST00000375218 LIG1P18858 919 aa11.29□□□□□ -0.6
UBR4-201ENST00000375218 SSR1P43307 286 aaKnown RBP11.29□□□□□ -0.6
UBR4-201ENST00000375218 MAF1Q9H063 256 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms