RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 NBPF6Q5VWK0 638 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 NBPF5PQ86XG9 351 aaPredicted RBP4.94□□□□□ -1.62
USH2A-202ENST00000366942 SMCR8Q8TEV9 937 aaPredicted RBP4.94□□□□□ -1.62
USH2A-202ENST00000366942 NBPF4Q96M43 638 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 SETDB2Q96T68 719 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 MRS2Q9HD23 443 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 RPGRIP1LQ68CZ1 1315 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 TRAPPC3LQ5T215 181 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 ANKRD13DQ6ZTN6 518 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 CCDC112Q8NEF3 446 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 RWDD1Q9H446 243 aaPredicted RBP4.94□□□□□ -1.62
USH2A-202ENST00000366942 PTPRKQ15262 1439 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 FHOD3Q2V2M9 1422 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 M0QZ92 97 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 CCNA1P78396 465 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 TPTE2Q6XPS3 522 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 LARGE2Q8N3Y3 721 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 RUFY2Q8WXA3 655 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.94□□□□□ -1.62
USH2A-202ENST00000366942 SALL2Q9Y467 1007 aaPredicted RBP4.94□□□□□ -1.62
USH2A-202ENST00000366942 TCERG1O14776 1098 aaKnown RBP4.94□□□□□ -1.62
USH2A-202ENST00000366942 ZC3H6P61129 1189 aaKnown RBP4.94□□□□□ -1.62
USH2A-202ENST00000366942 GRIPAP1Q4V328 841 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 HOMER2Q9NSB8 354 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 KRT27Q7Z3Y8 459 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 NLGN1Q8N2Q7 840 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 ANKRD20A12PQ8NF67 263 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 SPATA32Q96LK8 384 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 DENND4BO75064 1496 aaPredicted RBP4.94□□□□□ -1.62
USH2A-202ENST00000366942 HTATIP2Q9BUP3 242 aa4.93□□□□□ -1.62
USH2A-202ENST00000366942 RTEL1Q9NZ71 1219 aa4.93□□□□□ -1.62
USH2A-202ENST00000366942 ORC3Q9UBD5 711 aaPredicted RBP4.93□□□□□ -1.62
USH2A-202ENST00000366942 RAB23Q9ULC3 237 aa4.93□□□□□ -1.62
USH2A-202ENST00000366942 DCDC2CA8MYV0 355 aa4.93□□□□□ -1.62
USH2A-202ENST00000366942 IFIT1P09914 478 aaKnown RBP4.93□□□□□ -1.62
USH2A-202ENST00000366942 EIF2S2P20042 333 aaKnown RBP4.93□□□□□ -1.62
USH2A-202ENST00000366942 DCAF15Q66K64 600 aa4.93□□□□□ -1.62
USH2A-202ENST00000366942 LRRC45Q96CN5 670 aa4.93□□□□□ -1.62
USH2A-202ENST00000366942 KCNH4Q9UQ05 1017 aa4.93□□□□□ -1.62
USH2A-202ENST00000366942 KTN1Q86UP2 1357 aaKnown RBP4.93□□□□□ -1.62
USH2A-202ENST00000366942 ZNF76P36508 570 aa4.93□□□□□ -1.62
USH2A-202ENST00000366942 AMOTQ4VCS5 1084 aa4.93□□□□□ -1.62
USH2A-202ENST00000366942 RRP7AQ9Y3A4 280 aaKnown RBP4.93□□□□□ -1.62
USH2A-202ENST00000366942 ST20-MTHFSA0A0A6YYL1 179 aa4.93□□□□□ -1.62
USH2A-202ENST00000366942 VIMP08670 466 aaKnown RBP4.93□□□□□ -1.62
USH2A-202ENST00000366942 MTHFSP49914 203 aa4.93□□□□□ -1.62
USH2A-202ENST00000366942 CC2D2BQ6DHV5 1058 aa4.93□□□□□ -1.62
USH2A-202ENST00000366942 ZNF530Q6P9A1 599 aaPredicted RBP4.93□□□□□ -1.62
USH2A-202ENST00000366942 RALYLQ86SE5 291 aaKnown RBP4.93□□□□□ -1.62
USH2A-202ENST00000366942 LEO1Q8WVC0 666 aaPredicted RBP4.93□□□□□ -1.62
USH2A-202ENST00000366942 GAPVD1Q14C86 1478 aa4.93□□□□□ -1.62
USH2A-202ENST00000366942 NSD3Q9BZ95 1437 aa4.93□□□□□ -1.62
USH2A-202ENST00000366942 PHF14O94880 888 aa4.92□□□□□ -1.62
USH2A-202ENST00000366942 REC8O95072 547 aa4.92□□□□□ -1.62
USH2A-202ENST00000366942 SLC4A10Q6U841 1118 aa4.92□□□□□ -1.62
USH2A-202ENST00000366942 NLRP3Q96P20 1036 aa4.92□□□□□ -1.62
USH2A-202ENST00000366942 ALDH1B1P30837 517 aa4.92□□□□□ -1.62
USH2A-202ENST00000366942 ANP32AP39687 249 aaKnown RBP4.92□□□□□ -1.62
USH2A-202ENST00000366942 GSTO1P78417 241 aa4.92□□□□□ -1.62
USH2A-202ENST00000366942 RUFY4Q6ZNE9 571 aa4.92□□□□□ -1.62
USH2A-202ENST00000366942 TNS4Q8IZW8 715 aa4.92□□□□□ -1.62
USH2A-202ENST00000366942 ZGPATQ8N5A5 531 aaKnown RBP4.92□□□□□ -1.62
USH2A-202ENST00000366942 ZBED2Q9BTP6 218 aa4.92□□□□□ -1.62
USH2A-202ENST00000366942 TNRQ92752 1358 aa4.92□□□□□ -1.62
USH2A-202ENST00000366942 CPLX1O14810 134 aa4.92□□□□□ -1.62
USH2A-202ENST00000366942 HMGB3O15347 200 aaKnown RBP4.92□□□□□ -1.62
USH2A-202ENST00000366942 EIF5P55010 431 aaKnown RBP4.92□□□□□ -1.62
USH2A-202ENST00000366942 CCDC158Q5M9N0 1113 aa4.92□□□□□ -1.62
USH2A-202ENST00000366942 USP48Q86UV5 1035 aa4.92□□□□□ -1.62
USH2A-202ENST00000366942 NBPF26B4DH59 902 aa4.92□□□□□ -1.62
USH2A-202ENST00000366942 BAG3O95817 575 aa4.92□□□□□ -1.62
USH2A-202ENST00000366942 IFIT2P09913 472 aaKnown RBP4.92□□□□□ -1.62
USH2A-202ENST00000366942 PNMA2Q9UL42 364 aa4.92□□□□□ -1.62
USH2A-202ENST00000366942 USP47Q96K76 1375 aa4.92□□□□□ -1.62
USH2A-202ENST00000366942 CCDC144AA2RUR9 1427 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 POTEJP0CG39 1038 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 CCDC57Q2TAC2 916 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 MYD88Q99836 296 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 G3BP2Q9UN86 482 aaKnown RBP4.91□□□□□ -1.62
USH2A-202ENST00000366942 FYB1O15117 783 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 NFXL1Q6ZNB6 911 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 ENGASEQ8NFI3 743 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 KCNG4Q8TDN1 519 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 PDCL3Q9H2J4 239 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 HOOK1Q9UJC3 728 aaKnown RBP4.91□□□□□ -1.62
USH2A-202ENST00000366942 CCNL1Q9UK58 526 aaPredicted RBP4.91□□□□□ -1.62
USH2A-202ENST00000366942 RAD50Q92878 1312 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 PLIN1O60240 522 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 NONOQ15233 471 aaKnown RBP eCLIP4.91□□□□□ -1.62
USH2A-202ENST00000366942 KMT5BQ4FZB7 885 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 ODR4Q5SWX8 454 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 AFAP1Q8N556 730 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 PDILTQ8N807 584 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 TPM3P06753 285 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 SYCP1Q15431 976 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 NFE2L2Q16236 605 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 SUPT20HL1Q3ZLR7 823 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 RBM17Q96I25 401 aaKnown RBP4.91□□□□□ -1.62
USH2A-202ENST00000366942 MAST3O60307 1309 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 SYNJ1O43426 1573 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms