RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 USP31Q70CQ4 1352 aa21.53■■□□□ 1.04
VAPA-201ENST00000340541 HSPA5P11021 654 aaKnown RBP21.53■■□□□ 1.04
VAPA-201ENST00000340541 EIF4G2P78344 907 aaKnown RBP eCLIP21.53■■□□□ 1.04
VAPA-201ENST00000340541 USP35Q9P2H5 1018 aa21.53■■□□□ 1.04
VAPA-201ENST00000340541 MYOM1P52179 1685 aa21.53■■□□□ 1.04
VAPA-201ENST00000340541 LRP5O75197 1615 aa21.52■■□□□ 1.04
VAPA-201ENST00000340541 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.52■■□□□ 1.04
VAPA-201ENST00000340541 ANKRD36BQ8N2N9 1353 aa21.51■■□□□ 1.03
VAPA-201ENST00000340541 PARD3Q8TEW0 1356 aa21.51■■□□□ 1.03
VAPA-201ENST00000340541 TRIM37O94972 964 aa21.51■■□□□ 1.03
VAPA-201ENST00000340541 CDCA8Q53HL2 280 aa21.51■■□□□ 1.03
VAPA-201ENST00000340541 NME9Q86XW9 330 aa21.51■■□□□ 1.03
VAPA-201ENST00000340541 CAMKK2Q96RR4 588 aa21.51■■□□□ 1.03
VAPA-201ENST00000340541 NFAT5O94916 1531 aa21.5■■□□□ 1.03
VAPA-201ENST00000340541 AATKQ6ZMQ8 1374 aa21.5■■□□□ 1.03
VAPA-201ENST00000340541 TNS1Q9HBL0 1735 aaKnown RBP21.49■■□□□ 1.03
VAPA-201ENST00000340541 COL18A1P39060 1754 aa21.49■■□□□ 1.03
VAPA-201ENST00000340541 PSDA5PKW4 1024 aaPredicted RBP21.49■■□□□ 1.03
VAPA-201ENST00000340541 COL5A2P05997 1499 aaPredicted RBP21.48■■□□□ 1.03
VAPA-201ENST00000340541 APBA3O96018 575 aa21.48■■□□□ 1.03
VAPA-201ENST00000340541 EZH2Q15910 746 aaKnown RBP21.48■■□□□ 1.03
VAPA-201ENST00000340541 CRB1P82279 1406 aa21.47■■□□□ 1.03
VAPA-201ENST00000340541 OVOS2A0A0J9YW53 1432 aa21.46■■□□□ 1.03
VAPA-201ENST00000340541 OVOS2Q6IE36 1432 aa21.46■■□□□ 1.03
VAPA-201ENST00000340541 KCNH5Q8NCM2 988 aa21.46■■□□□ 1.03
VAPA-201ENST00000340541 ARHGEF25Q86VW2 580 aa21.45■■□□□ 1.02
VAPA-201ENST00000340541 R3HDM1Q15032 1099 aaKnown RBP21.44■■□□□ 1.02
VAPA-201ENST00000340541 PARP4Q9UKK3 1724 aaKnown RBP21.43■■□□□ 1.02
VAPA-201ENST00000340541 SOX12O15370 315 aa21.42■■□□□ 1.02
VAPA-201ENST00000340541 CDCA7Q9BWT1 371 aaPredicted RBP21.41■■□□□ 1.02
VAPA-201ENST00000340541 CARD14Q9BXL6 1004 aa21.41■■□□□ 1.02
VAPA-201ENST00000340541 AXIN2Q9Y2T1 843 aa21.41■■□□□ 1.02
VAPA-201ENST00000340541 RGPD5Q99666 1765 aa21.41■■□□□ 1.02
VAPA-201ENST00000340541 ZBTB7CA1YPR0 619 aa21.4■■□□□ 1.02
VAPA-201ENST00000340541 NBPF14Q5TI25 921 aa21.4■■□□□ 1.02
VAPA-201ENST00000340541 TOM1L2Q6ZVM7 507 aa21.4■■□□□ 1.02
VAPA-201ENST00000340541 ABCC6O95255 1503 aa21.39■■□□□ 1.02
VAPA-201ENST00000340541 LTN1O94822 1766 aa21.39■■□□□ 1.01
VAPA-201ENST00000340541 WDR17Q8IZU2 1322 aa21.39■■□□□ 1.01
VAPA-201ENST00000340541 FYB1O15117 783 aa21.38■■□□□ 1.01
VAPA-201ENST00000340541 DDB1Q16531 1140 aa21.38■■□□□ 1.01
VAPA-201ENST00000340541 KIF20BQ96Q89 1820 aa21.38■■□□□ 1.01
VAPA-201ENST00000340541 OVOS2A0A0G2JMS6 1433 aa21.37■■□□□ 1.01
VAPA-201ENST00000340541 PLSCR1O15162 318 aa21.36■■□□□ 1.01
VAPA-201ENST00000340541 CARD10Q9BWT7 1032 aa21.36■■□□□ 1.01
VAPA-201ENST00000340541 NSD3Q9BZ95 1437 aa21.36■■□□□ 1.01
VAPA-201ENST00000340541 RREB1Q92766 1687 aa21.35■■□□□ 1.01
VAPA-201ENST00000340541 COG3Q96JB2 828 aa21.35■■□□□ 1.01
VAPA-201ENST00000340541 POLR3GLQ9BT43 218 aa21.34■■□□□ 1.01
VAPA-201ENST00000340541 GGNBP2Q9H3C7 697 aa21.34■■□□□ 1.01
VAPA-201ENST00000340541 BCL9O00512 1426 aa21.34■■□□□ 1.01
VAPA-201ENST00000340541 BCL11BQ9C0K0 894 aaPredicted RBP21.33■■□□□ 1.01
VAPA-201ENST00000340541 PEAK1Q9H792 1746 aa21.32■■□□□ 1
VAPA-201ENST00000340541 NUP188Q5SRE5 1749 aa21.3■■□□□ 1
VAPA-201ENST00000340541 CSB-PGBD3P0DP91 1061 aa21.3■■□□□ 1
VAPA-201ENST00000340541 FBLN1P23142 703 aa21.3■■□□□ 1
VAPA-201ENST00000340541 KIF7Q2M1P5 1343 aa21.29■■□□□ 1
VAPA-201ENST00000340541 LRRC37A3O60309 1634 aa21.29■■□□□ 1
VAPA-201ENST00000340541 CCDC7Q96M83 1385 aa21.29■■□□□ 1
VAPA-201ENST00000340541 EXOC5O00471 708 aa21.29■■□□□ 1
VAPA-201ENST00000340541 MARCH10Q8NA82 808 aaPredicted RBP21.29■■□□□ 1
VAPA-201ENST00000340541 MAP3K19Q56UN5 1328 aa21.29■■□□□ 1
VAPA-201ENST00000340541 RGPD3A6NKT7 1758 aaPredicted RBP21.28■■□□□ 1
VAPA-201ENST00000340541 RGPD4Q7Z3J3 1758 aa21.28■■□□□ 1
VAPA-201ENST00000340541 SBF2Q86WG5 1849 aa21.28■■□□□ 1
VAPA-201ENST00000340541 WNK3Q9BYP7 1800 aa21.28■■□□□ 1
VAPA-201ENST00000340541 PANK3Q9H999 370 aa21.27■■□□□ 1
VAPA-201ENST00000340541 ERBB3P21860 1342 aa21.27■□□□□ 0.99
VAPA-201ENST00000340541 IP6K1Q92551 441 aa21.26■□□□□ 0.99
VAPA-201ENST00000340541 SPON1Q9HCB6 807 aa21.25■□□□□ 0.99
VAPA-201ENST00000340541 CGNL1Q0VF96 1302 aa21.25■□□□□ 0.99
VAPA-201ENST00000340541 ANKRD26Q9UPS8 1709 aa21.24■□□□□ 0.99
VAPA-201ENST00000340541 KCNQ2O43526 872 aa21.23■□□□□ 0.99
VAPA-201ENST00000340541 HOXC9P31274 260 aa21.23■□□□□ 0.99
VAPA-201ENST00000340541 RRS1Q15050 365 aaKnown RBP21.23■□□□□ 0.99
VAPA-201ENST00000340541 ANKRD24Q8TF21 1146 aa21.23■□□□□ 0.99
VAPA-201ENST00000340541 RTL1A6NKG5 1358 aa21.22■□□□□ 0.99
VAPA-201ENST00000340541 PROM2Q8N271 834 aa21.2■□□□□ 0.98
VAPA-201ENST00000340541 FAM208AQ9UK61 1670 aaKnown RBP21.2■□□□□ 0.98
VAPA-201ENST00000340541 WASHC2AQ641Q2 1341 aa21.2■□□□□ 0.98
VAPA-201ENST00000340541 AMPHP49418 695 aa21.19■□□□□ 0.98
VAPA-201ENST00000340541 PTF1AQ7RTS3 328 aa21.19■□□□□ 0.98
VAPA-201ENST00000340541 NLRP2Q9NX02 1062 aa21.18■□□□□ 0.98
VAPA-201ENST00000340541 TNS2Q63HR2 1409 aa21.18■□□□□ 0.98
VAPA-201ENST00000340541 RGPD2P0DJD1 1756 aa21.18■□□□□ 0.98
VAPA-201ENST00000340541 IL2RBP14784 551 aa21.17■□□□□ 0.98
VAPA-201ENST00000340541 KIF24Q5T7B8 1368 aa21.17■□□□□ 0.98
VAPA-201ENST00000340541 MAP2P11137 1827 aaKnown RBP21.16■□□□□ 0.98
VAPA-201ENST00000340541 NSD2O96028 1365 aa21.16■□□□□ 0.98
VAPA-201ENST00000340541 TXNRD1Q16881 649 aa21.16■□□□□ 0.98
VAPA-201ENST00000340541 LTV1Q96GA3 475 aaPredicted RBP21.16■□□□□ 0.98
VAPA-201ENST00000340541 PPP1R1BQ9UD71 204 aaPredicted RBP21.16■□□□□ 0.98
VAPA-201ENST00000340541 FLT4P35916 1363 aa21.15■□□□□ 0.98
VAPA-201ENST00000340541 EMILIN1Q9Y6C2 1016 aa21.15■□□□□ 0.98
VAPA-201ENST00000340541 INSRP06213 1382 aa21.14■□□□□ 0.98
VAPA-201ENST00000340541 HSP90AB2PQ58FF8 381 aa21.14■□□□□ 0.97
VAPA-201ENST00000340541 ANO8Q9HCE9 1232 aaPredicted RBP21.14■□□□□ 0.97
VAPA-201ENST00000340541 PER1O15534 1290 aaPredicted RBP21.13■□□□□ 0.97
VAPA-201ENST00000340541 AMER1Q5JTC6 1135 aaPredicted RBP21.13■□□□□ 0.97
VAPA-201ENST00000340541 STK32BQ9NY57 414 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms