RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 FLT4P35916 1363 aa29.94■■■□□ 2.38
SDC3-202ENST00000339394 SMG6Q86US8 1419 aaKnown RBP29.94■■■□□ 2.38
SDC3-202ENST00000339394 RTL1A6NKG5 1358 aa29.94■■■□□ 2.38
SDC3-202ENST00000339394 FNBP4Q8N3X1 1017 aaPredicted RBP29.93■■■□□ 2.38
SDC3-202ENST00000339394 LTN1O94822 1766 aa29.9■■■□□ 2.38
SDC3-202ENST00000339394 CAMTA1Q9Y6Y1 1673 aa29.9■■■□□ 2.38
SDC3-202ENST00000339394 SLIT2O94813 1529 aa29.89■■■□□ 2.38
SDC3-202ENST00000339394 MAP2P11137 1827 aaKnown RBP29.89■■■□□ 2.38
SDC3-202ENST00000339394 COL14A1Q05707 1796 aaKnown RBP29.89■■■□□ 2.38
SDC3-202ENST00000339394 PEAK1Q9H792 1746 aa29.89■■■□□ 2.38
SDC3-202ENST00000339394 BLMP54132 1417 aaPredicted RBP29.89■■■□□ 2.37
SDC3-202ENST00000339394 INSRP06213 1382 aa29.88■■■□□ 2.37
SDC3-202ENST00000339394 ABCC6O95255 1503 aa29.87■■■□□ 2.37
SDC3-202ENST00000339394 COL18A1P39060 1754 aa29.87■■■□□ 2.37
SDC3-202ENST00000339394 LMO7Q8WWI1 1683 aa29.87■■■□□ 2.37
SDC3-202ENST00000339394 AFF2P51816 1311 aa29.87■■■□□ 2.37
SDC3-202ENST00000339394 CDK12Q9NYV4 1490 aaPredicted RBP29.87■■■□□ 2.37
SDC3-202ENST00000339394 EVA1CP58658 441 aa29.86■■■□□ 2.37
SDC3-202ENST00000339394 ANKRD24Q8TF21 1146 aa29.86■■■□□ 2.37
SDC3-202ENST00000339394 LTV1Q96GA3 475 aaPredicted RBP29.86■■■□□ 2.37
SDC3-202ENST00000339394 STRN4Q9NRL3 753 aa29.86■■■□□ 2.37
SDC3-202ENST00000339394 ERBB3P21860 1342 aa29.85■■■□□ 2.37
SDC3-202ENST00000339394 UNC5CLQ8IV45 518 aa29.85■■■□□ 2.37
SDC3-202ENST00000339394 USP21Q9UK80 565 aa29.85■■■□□ 2.37
SDC3-202ENST00000339394 BCL9LQ86UU0 1499 aa29.84■■■□□ 2.37
SDC3-202ENST00000339394 COL5A2P05997 1499 aaPredicted RBP29.84■■■□□ 2.37
SDC3-202ENST00000339394 CFAP53Q96M91 514 aa29.83■■■□□ 2.37
SDC3-202ENST00000339394 EIF4A2Q14240 407 aaKnown RBP29.81■■■□□ 2.36
SDC3-202ENST00000339394 CSB-PGBD3P0DP91 1061 aa29.81■■■□□ 2.36
SDC3-202ENST00000339394 LARP1Q6PKG0 1096 aaKnown RBP29.81■■■□□ 2.36
SDC3-202ENST00000339394 WDR17Q8IZU2 1322 aa29.8■■■□□ 2.36
SDC3-202ENST00000339394 PLCH1Q4KWH8 1693 aa29.79■■■□□ 2.36
SDC3-202ENST00000339394 DIAPH1O60610 1272 aaKnown RBP29.78■■■□□ 2.36
SDC3-202ENST00000339394 MIER1Q8N108 512 aa29.78■■■□□ 2.36
SDC3-202ENST00000339394 IL13P35225 146 aa29.77■■■□□ 2.36
SDC3-202ENST00000339394 CCDC184Q52MB2 194 aa29.77■■■□□ 2.36
SDC3-202ENST00000339394 TOM1L2Q6ZVM7 507 aa29.77■■■□□ 2.36
SDC3-202ENST00000339394 NWD2Q9ULI1 1742 aa29.76■■■□□ 2.35
SDC3-202ENST00000339394 COL3A1P02461 1466 aaPredicted RBP29.76■■■□□ 2.35
SDC3-202ENST00000339394 ZNF772Q68DY9 489 aaPredicted RBP29.75■■■□□ 2.35
SDC3-202ENST00000339394 NLRP2Q9NX02 1062 aa29.75■■■□□ 2.35
SDC3-202ENST00000339394 RGPD5Q99666 1765 aa29.74■■■□□ 2.35
SDC3-202ENST00000339394 VPS72Q15906 364 aa29.74■■■□□ 2.35
SDC3-202ENST00000339394 NBPF6Q5VWK0 638 aa29.74■■■□□ 2.35
SDC3-202ENST00000339394 NBPF4Q96M43 638 aa29.74■■■□□ 2.35
SDC3-202ENST00000339394 PHF23Q9BUL5 403 aaPredicted RBP29.73■■■□□ 2.35
SDC3-202ENST00000339394 RGS17Q9UGC6 210 aaPredicted RBP29.73■■■□□ 2.35
SDC3-202ENST00000339394 EYA1Q99502 592 aa29.73■■■□□ 2.35
SDC3-202ENST00000339394 QTRT2Q9H974 415 aaKnown RBP29.73■■■□□ 2.35
SDC3-202ENST00000339394 NRAPQ86VF7 1730 aa29.72■■■□□ 2.35
SDC3-202ENST00000339394 CRB1P82279 1406 aa29.72■■■□□ 2.35
SDC3-202ENST00000339394 TRPC5Q9UL62 973 aaPredicted RBP29.72■■■□□ 2.35
SDC3-202ENST00000339394 CARD10Q9BWT7 1032 aa29.71■■■□□ 2.35
SDC3-202ENST00000339394 USP35Q9P2H5 1018 aa29.71■■■□□ 2.35
SDC3-202ENST00000339394 CCDC9Q9Y3X0 531 aaKnown RBP29.71■■■□□ 2.35
SDC3-202ENST00000339394 MRS2Q9HD23 443 aa29.7■■■□□ 2.35
SDC3-202ENST00000339394 SPATA31A5Q5VU36 1347 aa29.69■■■□□ 2.34
SDC3-202ENST00000339394 SPATA31A7Q8IWB4 1347 aa29.69■■■□□ 2.34
SDC3-202ENST00000339394 NUDCQ9Y266 331 aa29.69■■■□□ 2.34
SDC3-202ENST00000339394 U2SURPO15042 1029 aaKnown RBP29.69■■■□□ 2.34
SDC3-202ENST00000339394 ATRNO75882 1429 aa29.68■■■□□ 2.34
SDC3-202ENST00000339394 SPATA31A1Q5TZJ5 1347 aa29.68■■■□□ 2.34
SDC3-202ENST00000339394 USHBP1Q8N6Y0 703 aa29.68■■■□□ 2.34
SDC3-202ENST00000339394 IGSF1Q8N6C5 1336 aa29.67■■■□□ 2.34
SDC3-202ENST00000339394 GJD4Q96KN9 370 aaPredicted RBP29.67■■■□□ 2.34
SDC3-202ENST00000339394 CCER2I3L3R5 266 aa29.66■■■□□ 2.34
SDC3-202ENST00000339394 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.65■■■□□ 2.34
SDC3-202ENST00000339394 TCP11L2Q8N4U5 519 aa29.64■■■□□ 2.34
SDC3-202ENST00000339394 U2AF1L5P0DN76 240 aaPredicted RBP29.63■■■□□ 2.33
SDC3-202ENST00000339394 U2AF1Q01081 240 aaKnown RBP eCLIP29.63■■■□□ 2.33
SDC3-202ENST00000339394 SULT6B1Q6IMI4 303 aa29.63■■■□□ 2.33
SDC3-202ENST00000339394 AEBP1Q8IUX7 1158 aa29.62■■■□□ 2.33
SDC3-202ENST00000339394 THRAP3Q9Y2W1 955 aaKnown RBP29.62■■■□□ 2.33
SDC3-202ENST00000339394 HMOX1P09601 288 aa29.61■■■□□ 2.33
SDC3-202ENST00000339394 POTEAQ6S8J7 498 aa29.61■■■□□ 2.33
SDC3-202ENST00000339394 NCAPD2Q15021 1401 aa29.6■■■□□ 2.33
SDC3-202ENST00000339394 PNISRQ8TF01 805 aaKnown RBP29.6■■■□□ 2.33
SDC3-202ENST00000339394 FAM208AQ9UK61 1670 aaKnown RBP29.59■■■□□ 2.33
SDC3-202ENST00000339394 WDR43Q15061 677 aaKnown RBP eCLIP29.59■■■□□ 2.33
SDC3-202ENST00000339394 KDRP35968 1356 aa29.58■■■□□ 2.33
SDC3-202ENST00000339394 BARGINQ6ZT62 677 aa29.58■■■□□ 2.33
SDC3-202ENST00000339394 RBM6P78332 1123 aaKnown RBP29.57■■■□□ 2.32
SDC3-202ENST00000339394 FAM98CQ17RN3 349 aaKnown RBP29.57■■■□□ 2.32
SDC3-202ENST00000339394 RGPD1P0DJD0 1748 aa29.57■■■□□ 2.32
SDC3-202ENST00000339394 ADAMTS8Q9UP79 889 aa29.56■■■□□ 2.32
SDC3-202ENST00000339394 RGPD2P0DJD1 1756 aa29.56■■■□□ 2.32
SDC3-202ENST00000339394 IL2RBP14784 551 aa29.55■■■□□ 2.32
SDC3-202ENST00000339394 RXRBP28702 533 aa29.55■■■□□ 2.32
SDC3-202ENST00000339394 RAPGEF4Q8WZA2 1011 aa29.55■■■□□ 2.32
SDC3-202ENST00000339394 GLI3P10071 1580 aa29.54■■■□□ 2.32
SDC3-202ENST00000339394 FCHSD2O94868 740 aa29.54■■■□□ 2.32
SDC3-202ENST00000339394 ONECUT3O60422 494 aaPredicted RBP29.53■■■□□ 2.32
SDC3-202ENST00000339394 RSPH6AQ9H0K4 717 aa29.53■■■□□ 2.32
SDC3-202ENST00000339394 CDCA7Q9BWT1 371 aaPredicted RBP29.52■■■□□ 2.32
SDC3-202ENST00000339394 DISP2A7MBM2 1401 aa29.51■■■□□ 2.31
SDC3-202ENST00000339394 TATP17735 454 aaPredicted RBP29.51■■■□□ 2.31
SDC3-202ENST00000339394 MEGF6O75095 1541 aa29.5■■■□□ 2.31
SDC3-202ENST00000339394 PRKAR2BP31323 418 aa29.5■■■□□ 2.31
SDC3-202ENST00000339394 FAM9BQ8IZU0 186 aa29.49■■■□□ 2.31
SDC3-202ENST00000339394 A0A0G2JS52 829 aa29.47■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms