RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 NSD3Q9BZ95 1437 aa19.3■□□□□ 0.68
LIMS1-201ENST00000332345 NFAT5O94916 1531 aa19.3■□□□□ 0.68
LIMS1-201ENST00000332345 LMO7Q8WWI1 1683 aa19.3■□□□□ 0.68
LIMS1-201ENST00000332345 CGNL1Q0VF96 1302 aa19.29■□□□□ 0.68
LIMS1-201ENST00000332345 KIF7Q2M1P5 1343 aa19.29■□□□□ 0.68
LIMS1-201ENST00000332345 SPATA31A1Q5TZJ5 1347 aa19.29■□□□□ 0.68
LIMS1-201ENST00000332345 A0A0G2JS52 829 aa19.28■□□□□ 0.68
LIMS1-201ENST00000332345 MYT1Q01538 1121 aa19.28■□□□□ 0.68
LIMS1-201ENST00000332345 USP35Q9P2H5 1018 aa19.28■□□□□ 0.68
LIMS1-201ENST00000332345 COL18A1P39060 1754 aa19.28■□□□□ 0.68
LIMS1-201ENST00000332345 THRAP3Q9Y2W1 955 aaKnown RBP19.27■□□□□ 0.68
LIMS1-201ENST00000332345 COL5A2P05997 1499 aaPredicted RBP19.27■□□□□ 0.67
LIMS1-201ENST00000332345 CSB-PGBD3P0DP91 1061 aa19.26■□□□□ 0.67
LIMS1-201ENST00000332345 TOM1L2Q6ZVM7 507 aa19.26■□□□□ 0.67
LIMS1-201ENST00000332345 TCP11L2Q8N4U5 519 aa19.26■□□□□ 0.67
LIMS1-201ENST00000332345 BARGINQ6ZT62 677 aa19.25■□□□□ 0.67
LIMS1-201ENST00000332345 IP6K1Q92551 441 aa19.25■□□□□ 0.67
LIMS1-201ENST00000332345 KIF20BQ96Q89 1820 aa19.25■□□□□ 0.67
LIMS1-201ENST00000332345 WDR17Q8IZU2 1322 aa19.25■□□□□ 0.67
LIMS1-201ENST00000332345 LTN1O94822 1766 aa19.24■□□□□ 0.67
LIMS1-201ENST00000332345 RGPD5Q99666 1765 aa19.24■□□□□ 0.67
LIMS1-201ENST00000332345 AMPHP49418 695 aa19.24■□□□□ 0.67
LIMS1-201ENST00000332345 KNSTRNQ9Y448 316 aa19.24■□□□□ 0.67
LIMS1-201ENST00000332345 ABCC6O95255 1503 aa19.24■□□□□ 0.67
LIMS1-201ENST00000332345 CRB1P82279 1406 aa19.24■□□□□ 0.67
LIMS1-201ENST00000332345 FBLN1P23142 703 aa19.23■□□□□ 0.67
LIMS1-201ENST00000332345 KRT27Q7Z3Y8 459 aa19.23■□□□□ 0.67
LIMS1-201ENST00000332345 MAP3K19Q56UN5 1328 aa19.23■□□□□ 0.67
LIMS1-201ENST00000332345 ZEB1P37275 1124 aaPredicted RBP19.22■□□□□ 0.67
LIMS1-201ENST00000332345 CARD10Q9BWT7 1032 aa19.22■□□□□ 0.67
LIMS1-201ENST00000332345 CCDC7Q96M83 1385 aa19.21■□□□□ 0.67
LIMS1-201ENST00000332345 UPF1Q92900 1129 aaKnown RBP eCLIP19.21■□□□□ 0.67
LIMS1-201ENST00000332345 WASHC2AQ641Q2 1341 aa19.21■□□□□ 0.67
LIMS1-201ENST00000332345 RRS1Q15050 365 aaKnown RBP19.2■□□□□ 0.66
LIMS1-201ENST00000332345 ANKRD24Q8TF21 1146 aa19.2■□□□□ 0.66
LIMS1-201ENST00000332345 BRWD3Q6RI45 1802 aa19.2■□□□□ 0.66
LIMS1-201ENST00000332345 BLMP54132 1417 aaPredicted RBP19.19■□□□□ 0.66
LIMS1-201ENST00000332345 HOXC9P31274 260 aa19.19■□□□□ 0.66
LIMS1-201ENST00000332345 ERBB3P21860 1342 aa19.19■□□□□ 0.66
LIMS1-201ENST00000332345 CDCA7Q9BWT1 371 aaPredicted RBP19.18■□□□□ 0.66
LIMS1-201ENST00000332345 NLRP2Q9NX02 1062 aa19.18■□□□□ 0.66
LIMS1-201ENST00000332345 NSD2O96028 1365 aa19.18■□□□□ 0.66
LIMS1-201ENST00000332345 PDE3BQ13370 1112 aa19.17■□□□□ 0.66
LIMS1-201ENST00000332345 CCDC125Q86Z20 511 aa19.16■□□□□ 0.66
LIMS1-201ENST00000332345 LTV1Q96GA3 475 aaPredicted RBP19.16■□□□□ 0.66
LIMS1-201ENST00000332345 RTL1A6NKG5 1358 aa19.16■□□□□ 0.66
LIMS1-201ENST00000332345 KIF24Q5T7B8 1368 aa19.16■□□□□ 0.66
LIMS1-201ENST00000332345 MORC1Q86VD1 984 aa19.15■□□□□ 0.66
LIMS1-201ENST00000332345 THSD7AQ9UPZ6 1657 aa19.14■□□□□ 0.66
LIMS1-201ENST00000332345 PPM1GO15355 546 aaPredicted RBP19.14■□□□□ 0.65
LIMS1-201ENST00000332345 PER1O15534 1290 aaPredicted RBP19.14■□□□□ 0.65
LIMS1-201ENST00000332345 TNNT2P45379 298 aaPredicted RBP19.14■□□□□ 0.65
LIMS1-201ENST00000332345 MAP2P11137 1827 aaKnown RBP19.14■□□□□ 0.65
LIMS1-201ENST00000332345 ANKRD26Q9UPS8 1709 aa19.12■□□□□ 0.65
LIMS1-201ENST00000332345 FLT4P35916 1363 aa19.12■□□□□ 0.65
LIMS1-201ENST00000332345 DDB1Q16531 1140 aa19.12■□□□□ 0.65
LIMS1-201ENST00000332345 AMER1Q5JTC6 1135 aaPredicted RBP19.12■□□□□ 0.65
LIMS1-201ENST00000332345 POLKQ9UBT6 870 aa19.12■□□□□ 0.65
LIMS1-201ENST00000332345 EMILIN1Q9Y6C2 1016 aa19.12■□□□□ 0.65
LIMS1-201ENST00000332345 INSRP06213 1382 aa19.11■□□□□ 0.65
LIMS1-201ENST00000332345 EP400Q96L91 3159 aa19.11■□□□□ 0.65
LIMS1-201ENST00000332345 EXOC5O00471 708 aa19.11■□□□□ 0.65
LIMS1-201ENST00000332345 HSP90AB2PQ58FF8 381 aa19.11■□□□□ 0.65
LIMS1-201ENST00000332345 FAM196AQ6ZSG2 479 aa19.11■□□□□ 0.65
LIMS1-201ENST00000332345 SMG6Q86US8 1419 aaKnown RBP19.1■□□□□ 0.65
LIMS1-201ENST00000332345 SF3B2Q13435 895 aaKnown RBP19.1■□□□□ 0.65
LIMS1-201ENST00000332345 IL2RBP14784 551 aa19.09■□□□□ 0.65
LIMS1-201ENST00000332345 FAM182BQ5T319 152 aa19.09■□□□□ 0.65
LIMS1-201ENST00000332345 PARP4Q9UKK3 1724 aaKnown RBP19.08■□□□□ 0.65
LIMS1-201ENST00000332345 FAM208AQ9UK61 1670 aaKnown RBP19.08■□□□□ 0.64
LIMS1-201ENST00000332345 CC2D1BQ5T0F9 858 aaKnown RBP19.06■□□□□ 0.64
LIMS1-201ENST00000332345 NBPF6Q5VWK0 638 aa19.05■□□□□ 0.64
LIMS1-201ENST00000332345 NBPF4Q96M43 638 aa19.05■□□□□ 0.64
LIMS1-201ENST00000332345 DISP2A7MBM2 1401 aa19.05■□□□□ 0.64
LIMS1-201ENST00000332345 PEAK1Q9H792 1746 aa19.05■□□□□ 0.64
LIMS1-201ENST00000332345 NPC1L1Q9UHC9 1359 aa19.05■□□□□ 0.64
LIMS1-201ENST00000332345 WNK3Q9BYP7 1800 aa19.04■□□□□ 0.64
LIMS1-201ENST00000332345 RGPD2P0DJD1 1756 aa19.02■□□□□ 0.64
LIMS1-201ENST00000332345 MARCH10Q8NA82 808 aaPredicted RBP19.02■□□□□ 0.64
LIMS1-201ENST00000332345 CNGB1Q14028 1251 aaPredicted RBP19.01■□□□□ 0.63
LIMS1-201ENST00000332345 RAPGEF4Q8WZA2 1011 aa19.01■□□□□ 0.63
LIMS1-201ENST00000332345 LRRC37A3O60309 1634 aa19■□□□□ 0.63
LIMS1-201ENST00000332345 TRIM37O94972 964 aa19■□□□□ 0.63
LIMS1-201ENST00000332345 USHBP1Q8N6Y0 703 aa19■□□□□ 0.63
LIMS1-201ENST00000332345 OVOS2A0A0G2JMS6 1433 aa19■□□□□ 0.63
LIMS1-201ENST00000332345 TATP17735 454 aaPredicted RBP18.99■□□□□ 0.63
LIMS1-201ENST00000332345 BAG6P46379 1132 aa18.99■□□□□ 0.63
LIMS1-201ENST00000332345 EIF4A2Q14240 407 aaKnown RBP18.99■□□□□ 0.63
LIMS1-201ENST00000332345 MTHFSP49914 203 aa18.98■□□□□ 0.63
LIMS1-201ENST00000332345 ZCRB1Q8TBF4 217 aaKnown RBP18.98■□□□□ 0.63
LIMS1-201ENST00000332345 EYA1Q99502 592 aa18.98■□□□□ 0.63
LIMS1-201ENST00000332345 TNS2Q63HR2 1409 aa18.98■□□□□ 0.63
LIMS1-201ENST00000332345 DDX54Q8TDD1 881 aaKnown RBP18.97■□□□□ 0.63
LIMS1-201ENST00000332345 KAT6BQ8WYB5 2073 aa18.96■□□□□ 0.63
LIMS1-201ENST00000332345 APBA3O96018 575 aa18.96■□□□□ 0.63
LIMS1-201ENST00000332345 DEFB132Q7Z7B7 95 aa18.96■□□□□ 0.63
LIMS1-201ENST00000332345 RGPD1P0DJD0 1748 aa18.96■□□□□ 0.63
LIMS1-201ENST00000332345 BCL9O00512 1426 aa18.95■□□□□ 0.62
LIMS1-201ENST00000332345 DDX10Q13206 875 aaKnown RBP18.94■□□□□ 0.62
LIMS1-201ENST00000332345 BCL11BQ9C0K0 894 aaPredicted RBP18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms