RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 SLC24A1O60721 1099 aa16.71■□□□□ 0.27
SCFD1-201ENST00000311943 EVA1CP58658 441 aa16.7■□□□□ 0.26
SCFD1-201ENST00000311943 TNNT2P45379 298 aaPredicted RBP16.69■□□□□ 0.26
SCFD1-201ENST00000311943 COL5A2P05997 1499 aaPredicted RBP16.69■□□□□ 0.26
SCFD1-201ENST00000311943 SPATA31A5Q5VU36 1347 aa16.69■□□□□ 0.26
SCFD1-201ENST00000311943 SPATA31A7Q8IWB4 1347 aa16.69■□□□□ 0.26
SCFD1-201ENST00000311943 A0A0G2JS52 829 aa16.69■□□□□ 0.26
SCFD1-201ENST00000311943 MYT1Q01538 1121 aa16.69■□□□□ 0.26
SCFD1-201ENST00000311943 SEPT12Q8IYM1 358 aa16.69■□□□□ 0.26
SCFD1-201ENST00000311943 COG3Q96JB2 828 aa16.68■□□□□ 0.26
SCFD1-201ENST00000311943 MAP3K19Q56UN5 1328 aa16.67■□□□□ 0.26
SCFD1-201ENST00000311943 SPATA31A1Q5TZJ5 1347 aa16.67■□□□□ 0.26
SCFD1-201ENST00000311943 KCNH5Q8NCM2 988 aa16.67■□□□□ 0.26
SCFD1-201ENST00000311943 BRWD3Q6RI45 1802 aa16.67■□□□□ 0.26
SCFD1-201ENST00000311943 LTN1O94822 1766 aa16.67■□□□□ 0.26
SCFD1-201ENST00000311943 AATKQ6ZMQ8 1374 aa16.67■□□□□ 0.26
SCFD1-201ENST00000311943 LTV1Q96GA3 475 aaPredicted RBP16.67■□□□□ 0.26
SCFD1-201ENST00000311943 CCDC7Q96M83 1385 aa16.66■□□□□ 0.26
SCFD1-201ENST00000311943 USP54Q70EL1 1684 aa16.65■□□□□ 0.26
SCFD1-201ENST00000311943 KIF20BQ96Q89 1820 aa16.65■□□□□ 0.26
SCFD1-201ENST00000311943 EMILIN1Q9Y6C2 1016 aa16.64■□□□□ 0.25
SCFD1-201ENST00000311943 TOM1L2Q6ZVM7 507 aa16.63■□□□□ 0.25
SCFD1-201ENST00000311943 ONECUT3O60422 494 aaPredicted RBP16.62■□□□□ 0.25
SCFD1-201ENST00000311943 CDK12Q9NYV4 1490 aaPredicted RBP16.62■□□□□ 0.25
SCFD1-201ENST00000311943 PPM1GO15355 546 aaPredicted RBP16.62■□□□□ 0.25
SCFD1-201ENST00000311943 CSB-PGBD3P0DP91 1061 aa16.62■□□□□ 0.25
SCFD1-201ENST00000311943 HSP90AB2PQ58FF8 381 aa16.62■□□□□ 0.25
SCFD1-201ENST00000311943 UPF1Q92900 1129 aaKnown RBP eCLIP16.62■□□□□ 0.25
SCFD1-201ENST00000311943 PEAK1Q9H792 1746 aa16.61■□□□□ 0.25
SCFD1-201ENST00000311943 PER1O15534 1290 aaPredicted RBP16.61■□□□□ 0.25
SCFD1-201ENST00000311943 HOXC9P31274 260 aa16.61■□□□□ 0.25
SCFD1-201ENST00000311943 ANKRD24Q8TF21 1146 aa16.6■□□□□ 0.25
SCFD1-201ENST00000311943 WDR17Q8IZU2 1322 aa16.6■□□□□ 0.25
SCFD1-201ENST00000311943 ERBB3P21860 1342 aa16.59■□□□□ 0.25
SCFD1-201ENST00000311943 AMPHP49418 695 aa16.59■□□□□ 0.25
SCFD1-201ENST00000311943 CRB1P82279 1406 aa16.59■□□□□ 0.25
SCFD1-201ENST00000311943 CC2D1BQ5T0F9 858 aaKnown RBP16.59■□□□□ 0.25
SCFD1-201ENST00000311943 USHBP1Q8N6Y0 703 aa16.59■□□□□ 0.25
SCFD1-201ENST00000311943 RGPD2P0DJD1 1756 aa16.59■□□□□ 0.25
SCFD1-201ENST00000311943 CGNL1Q0VF96 1302 aa16.59■□□□□ 0.25
SCFD1-201ENST00000311943 TCP11L2Q8N4U5 519 aa16.58■□□□□ 0.25
SCFD1-201ENST00000311943 IP6K1Q92551 441 aa16.58■□□□□ 0.25
SCFD1-201ENST00000311943 AMER1Q5JTC6 1135 aaPredicted RBP16.58■□□□□ 0.24
SCFD1-201ENST00000311943 NLRP2Q9NX02 1062 aa16.58■□□□□ 0.24
SCFD1-201ENST00000311943 THSD7AQ9UPZ6 1657 aa16.57■□□□□ 0.24
SCFD1-201ENST00000311943 KRT27Q7Z3Y8 459 aa16.57■□□□□ 0.24
SCFD1-201ENST00000311943 POLKQ9UBT6 870 aa16.57■□□□□ 0.24
SCFD1-201ENST00000311943 KNSTRNQ9Y448 316 aa16.55■□□□□ 0.24
SCFD1-201ENST00000311943 NBPF6Q5VWK0 638 aa16.55■□□□□ 0.24
SCFD1-201ENST00000311943 NBPF4Q96M43 638 aa16.55■□□□□ 0.24
SCFD1-201ENST00000311943 PTF1AQ7RTS3 328 aa16.54■□□□□ 0.24
SCFD1-201ENST00000311943 MAP2P11137 1827 aaKnown RBP16.54■□□□□ 0.24
SCFD1-201ENST00000311943 BARGINQ6ZT62 677 aa16.53■□□□□ 0.24
SCFD1-201ENST00000311943 CARD10Q9BWT7 1032 aa16.53■□□□□ 0.24
SCFD1-201ENST00000311943 MORC1Q86VD1 984 aa16.52■□□□□ 0.24
SCFD1-201ENST00000311943 DEFB132Q7Z7B7 95 aa16.52■□□□□ 0.23
SCFD1-201ENST00000311943 ANKRD26Q9UPS8 1709 aa16.51■□□□□ 0.23
SCFD1-201ENST00000311943 DISP2A7MBM2 1401 aa16.5■□□□□ 0.23
SCFD1-201ENST00000311943 BLMP54132 1417 aaPredicted RBP16.5■□□□□ 0.23
SCFD1-201ENST00000311943 LRRC37A3O60309 1634 aa16.5■□□□□ 0.23
SCFD1-201ENST00000311943 MARCH10Q8NA82 808 aaPredicted RBP16.5■□□□□ 0.23
SCFD1-201ENST00000311943 DDX10Q13206 875 aaKnown RBP16.49■□□□□ 0.23
SCFD1-201ENST00000311943 FLT4P35916 1363 aa16.48■□□□□ 0.23
SCFD1-201ENST00000311943 WNK3Q9BYP7 1800 aa16.48■□□□□ 0.23
SCFD1-201ENST00000311943 TRIM37O94972 964 aa16.48■□□□□ 0.23
SCFD1-201ENST00000311943 PDE3BQ13370 1112 aa16.48■□□□□ 0.23
SCFD1-201ENST00000311943 DDB1Q16531 1140 aa16.48■□□□□ 0.23
SCFD1-201ENST00000311943 THRAP3Q9Y2W1 955 aaKnown RBP16.48■□□□□ 0.23
SCFD1-201ENST00000311943 FAM208AQ9UK61 1670 aaKnown RBP16.48■□□□□ 0.23
SCFD1-201ENST00000311943 SRCAPQ6ZRS2 3230 aa16.48■□□□□ 0.23
SCFD1-201ENST00000311943 INSRP06213 1382 aa16.47■□□□□ 0.23
SCFD1-201ENST00000311943 MEGF6O75095 1541 aa16.47■□□□□ 0.23
SCFD1-201ENST00000311943 ABCC6O95255 1503 aa16.47■□□□□ 0.23
SCFD1-201ENST00000311943 EIF4A2Q14240 407 aaKnown RBP16.46■□□□□ 0.23
SCFD1-201ENST00000311943 PARP4Q9UKK3 1724 aaKnown RBP16.46■□□□□ 0.23
SCFD1-201ENST00000311943 EYA1Q99502 592 aa16.46■□□□□ 0.23
SCFD1-201ENST00000311943 IL2RBP14784 551 aa16.45■□□□□ 0.22
SCFD1-201ENST00000311943 RTL1A6NKG5 1358 aa16.45■□□□□ 0.22
SCFD1-201ENST00000311943 MTHFSP49914 203 aa16.45■□□□□ 0.22
SCFD1-201ENST00000311943 DDX54Q8TDD1 881 aaKnown RBP16.44■□□□□ 0.22
SCFD1-201ENST00000311943 KCNQ2O43526 872 aa16.43■□□□□ 0.22
SCFD1-201ENST00000311943 ACSBG1Q96GR2 724 aa16.43■□□□□ 0.22
SCFD1-201ENST00000311943 EXOC5O00471 708 aa16.43■□□□□ 0.22
SCFD1-201ENST00000311943 AEBP1Q8IUX7 1158 aa16.43■□□□□ 0.22
SCFD1-201ENST00000311943 NSD2O96028 1365 aa16.42■□□□□ 0.22
SCFD1-201ENST00000311943 EN1Q05925 392 aaPredicted RBP16.42■□□□□ 0.22
SCFD1-201ENST00000311943 ZEB1P37275 1124 aaPredicted RBP16.4■□□□□ 0.22
SCFD1-201ENST00000311943 FAM196AQ6ZSG2 479 aa16.39■□□□□ 0.21
SCFD1-201ENST00000311943 TNS2Q63HR2 1409 aa16.39■□□□□ 0.21
SCFD1-201ENST00000311943 SMG6Q86US8 1419 aaKnown RBP16.39■□□□□ 0.21
SCFD1-201ENST00000311943 SHANK3Q9BYB0 1731 aa16.39■□□□□ 0.21
SCFD1-201ENST00000311943 EZH2Q15910 746 aaKnown RBP16.38■□□□□ 0.21
SCFD1-201ENST00000311943 KIF24Q5T7B8 1368 aa16.38■□□□□ 0.21
SCFD1-201ENST00000311943 TNS1Q9HBL0 1735 aaKnown RBP16.37■□□□□ 0.21
SCFD1-201ENST00000311943 IL13P35225 146 aa16.37■□□□□ 0.21
SCFD1-201ENST00000311943 APBA3O96018 575 aa16.36■□□□□ 0.21
SCFD1-201ENST00000311943 OVOS2A0A0G2JMS6 1433 aa16.36■□□□□ 0.21
SCFD1-201ENST00000311943 SBF2Q86WG5 1849 aa16.36■□□□□ 0.21
SCFD1-201ENST00000311943 HMOX1P09601 288 aa16.36■□□□□ 0.21
SCFD1-201ENST00000311943 PPP2R1AP30153 589 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 170 ms