RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 CENPBP07199 599 aaPredicted RBP22.99■■□□□ 1.27
SDCBP-201ENST00000260130 KNSTRNQ9Y448 316 aa22.99■■□□□ 1.27
SDCBP-201ENST00000260130 FBLN1P23142 703 aa22.99■■□□□ 1.27
SDCBP-201ENST00000260130 SPATA31A5Q5VU36 1347 aa22.98■■□□□ 1.27
SDCBP-201ENST00000260130 SPATA31A7Q8IWB4 1347 aa22.98■■□□□ 1.27
SDCBP-201ENST00000260130 KIF20BQ96Q89 1820 aa22.97■■□□□ 1.27
SDCBP-201ENST00000260130 COL5A2P05997 1499 aaPredicted RBP22.97■■□□□ 1.27
SDCBP-201ENST00000260130 LARP1Q6PKG0 1096 aaKnown RBP22.97■■□□□ 1.27
SDCBP-201ENST00000260130 COL18A1P39060 1754 aa22.96■■□□□ 1.27
SDCBP-201ENST00000260130 GLI3P10071 1580 aa22.96■■□□□ 1.27
SDCBP-201ENST00000260130 RGS12O14924 1447 aa22.95■■□□□ 1.26
SDCBP-201ENST00000260130 MAP3K19Q56UN5 1328 aa22.95■■□□□ 1.26
SDCBP-201ENST00000260130 SPATA31A1Q5TZJ5 1347 aa22.95■■□□□ 1.26
SDCBP-201ENST00000260130 PER1O15534 1290 aaPredicted RBP22.94■■□□□ 1.26
SDCBP-201ENST00000260130 ONECUT3O60422 494 aaPredicted RBP22.94■■□□□ 1.26
SDCBP-201ENST00000260130 ABCC6O95255 1503 aa22.94■■□□□ 1.26
SDCBP-201ENST00000260130 RRS1Q15050 365 aaKnown RBP22.93■■□□□ 1.26
SDCBP-201ENST00000260130 IP6K1Q92551 441 aa22.93■■□□□ 1.26
SDCBP-201ENST00000260130 NSD2O96028 1365 aa22.93■■□□□ 1.26
SDCBP-201ENST00000260130 AMPHP49418 695 aa22.92■■□□□ 1.26
SDCBP-201ENST00000260130 USP35Q9P2H5 1018 aa22.92■■□□□ 1.26
SDCBP-201ENST00000260130 WDR17Q8IZU2 1322 aa22.92■■□□□ 1.26
SDCBP-201ENST00000260130 FAM98CQ17RN3 349 aaKnown RBP22.91■■□□□ 1.26
SDCBP-201ENST00000260130 TOM1L2Q6ZVM7 507 aa22.91■■□□□ 1.26
SDCBP-201ENST00000260130 LTN1O94822 1766 aa22.91■■□□□ 1.26
SDCBP-201ENST00000260130 CSB-PGBD3P0DP91 1061 aa22.9■■□□□ 1.26
SDCBP-201ENST00000260130 AMER1Q5JTC6 1135 aaPredicted RBP22.9■■□□□ 1.26
SDCBP-201ENST00000260130 CRB1P82279 1406 aa22.9■■□□□ 1.26
SDCBP-201ENST00000260130 SOCS7O14512 581 aa22.9■■□□□ 1.26
SDCBP-201ENST00000260130 SEPT12Q8IYM1 358 aa22.9■■□□□ 1.26
SDCBP-201ENST00000260130 HOXC9P31274 260 aa22.89■■□□□ 1.26
SDCBP-201ENST00000260130 TCP11L2Q8N4U5 519 aa22.89■■□□□ 1.25
SDCBP-201ENST00000260130 ERBB3P21860 1342 aa22.89■■□□□ 1.25
SDCBP-201ENST00000260130 BLMP54132 1417 aaPredicted RBP22.88■■□□□ 1.25
SDCBP-201ENST00000260130 ANKRD24Q8TF21 1146 aa22.88■■□□□ 1.25
SDCBP-201ENST00000260130 THRAP3Q9Y2W1 955 aaKnown RBP22.88■■□□□ 1.25
SDCBP-201ENST00000260130 A0A0G2JS52 829 aa22.87■■□□□ 1.25
SDCBP-201ENST00000260130 TNNT2P45379 298 aaPredicted RBP22.87■■□□□ 1.25
SDCBP-201ENST00000260130 MYT1Q01538 1121 aa22.87■■□□□ 1.25
SDCBP-201ENST00000260130 MORC1Q86VD1 984 aa22.87■■□□□ 1.25
SDCBP-201ENST00000260130 RTL1A6NKG5 1358 aa22.87■■□□□ 1.25
SDCBP-201ENST00000260130 BARGINQ6ZT62 677 aa22.87■■□□□ 1.25
SDCBP-201ENST00000260130 RGPD5Q99666 1765 aa22.86■■□□□ 1.25
SDCBP-201ENST00000260130 EMILIN1Q9Y6C2 1016 aa22.86■■□□□ 1.25
SDCBP-201ENST00000260130 KIF24Q5T7B8 1368 aa22.85■■□□□ 1.25
SDCBP-201ENST00000260130 CARD10Q9BWT7 1032 aa22.85■■□□□ 1.25
SDCBP-201ENST00000260130 LTV1Q96GA3 475 aaPredicted RBP22.84■■□□□ 1.25
SDCBP-201ENST00000260130 POLKQ9UBT6 870 aa22.84■■□□□ 1.25
SDCBP-201ENST00000260130 ANKRD26Q9UPS8 1709 aa22.84■■□□□ 1.25
SDCBP-201ENST00000260130 NLRP2Q9NX02 1062 aa22.83■■□□□ 1.25
SDCBP-201ENST00000260130 FLT4P35916 1363 aa22.83■■□□□ 1.25
SDCBP-201ENST00000260130 PPM1GO15355 546 aaPredicted RBP22.83■■□□□ 1.24
SDCBP-201ENST00000260130 HSP90AB2PQ58FF8 381 aa22.83■■□□□ 1.24
SDCBP-201ENST00000260130 CC2D1BQ5T0F9 858 aaKnown RBP22.83■■□□□ 1.24
SDCBP-201ENST00000260130 NPC1L1Q9UHC9 1359 aa22.81■■□□□ 1.24
SDCBP-201ENST00000260130 INSRP06213 1382 aa22.81■■□□□ 1.24
SDCBP-201ENST00000260130 KRT27Q7Z3Y8 459 aa22.79■■□□□ 1.24
SDCBP-201ENST00000260130 THSD7AQ9UPZ6 1657 aa22.78■■□□□ 1.24
SDCBP-201ENST00000260130 PEAK1Q9H792 1746 aa22.78■■□□□ 1.24
SDCBP-201ENST00000260130 CNGB1Q14028 1251 aaPredicted RBP22.77■■□□□ 1.24
SDCBP-201ENST00000260130 CDCA7Q9BWT1 371 aaPredicted RBP22.77■■□□□ 1.24
SDCBP-201ENST00000260130 SMG6Q86US8 1419 aaKnown RBP22.76■■□□□ 1.23
SDCBP-201ENST00000260130 MAP2P11137 1827 aaKnown RBP22.76■■□□□ 1.23
SDCBP-201ENST00000260130 DDX10Q13206 875 aaKnown RBP22.74■■□□□ 1.23
SDCBP-201ENST00000260130 PDE3BQ13370 1112 aa22.74■■□□□ 1.23
SDCBP-201ENST00000260130 BRWD3Q6RI45 1802 aa22.74■■□□□ 1.23
SDCBP-201ENST00000260130 NBPF6Q5VWK0 638 aa22.73■■□□□ 1.23
SDCBP-201ENST00000260130 NBPF4Q96M43 638 aa22.73■■□□□ 1.23
SDCBP-201ENST00000260130 EP400Q96L91 3159 aa22.73■■□□□ 1.23
SDCBP-201ENST00000260130 DISP2A7MBM2 1401 aa22.72■■□□□ 1.23
SDCBP-201ENST00000260130 DDB1Q16531 1140 aa22.72■■□□□ 1.23
SDCBP-201ENST00000260130 UPF1Q92900 1129 aaKnown RBP eCLIP22.72■■□□□ 1.23
SDCBP-201ENST00000260130 GTF3C3Q9Y5Q9 886 aa22.72■■□□□ 1.23
SDCBP-201ENST00000260130 IL2RBP14784 551 aa22.72■■□□□ 1.23
SDCBP-201ENST00000260130 FAM208AQ9UK61 1670 aaKnown RBP22.71■■□□□ 1.23
SDCBP-201ENST00000260130 FAM182BQ5T319 152 aa22.7■■□□□ 1.22
SDCBP-201ENST00000260130 EXOC5O00471 708 aa22.69■■□□□ 1.22
SDCBP-201ENST00000260130 MTHFSP49914 203 aa22.69■■□□□ 1.22
SDCBP-201ENST00000260130 PARP4Q9UKK3 1724 aaKnown RBP22.69■■□□□ 1.22
SDCBP-201ENST00000260130 EIF4A2Q14240 407 aaKnown RBP22.69■■□□□ 1.22
SDCBP-201ENST00000260130 USHBP1Q8N6Y0 703 aa22.68■■□□□ 1.22
SDCBP-201ENST00000260130 EYA1Q99502 592 aa22.66■■□□□ 1.22
SDCBP-201ENST00000260130 WNK3Q9BYP7 1800 aa22.66■■□□□ 1.22
SDCBP-201ENST00000260130 FAM196AQ6ZSG2 479 aa22.65■■□□□ 1.22
SDCBP-201ENST00000260130 RGPD2P0DJD1 1756 aa22.65■■□□□ 1.22
SDCBP-201ENST00000260130 LRRC37A3O60309 1634 aa22.64■■□□□ 1.22
SDCBP-201ENST00000260130 CCDC125Q86Z20 511 aa22.63■■□□□ 1.21
SDCBP-201ENST00000260130 RAPGEF4Q8WZA2 1011 aa22.63■■□□□ 1.21
SDCBP-201ENST00000260130 MARCH10Q8NA82 808 aaPredicted RBP22.63■■□□□ 1.21
SDCBP-201ENST00000260130 TNS2Q63HR2 1409 aa22.62■■□□□ 1.21
SDCBP-201ENST00000260130 TATP17735 454 aaPredicted RBP22.6■■□□□ 1.21
SDCBP-201ENST00000260130 IL13P35225 146 aa22.6■■□□□ 1.21
SDCBP-201ENST00000260130 NCAPD2Q15021 1401 aa22.6■■□□□ 1.21
SDCBP-201ENST00000260130 MEGF6O75095 1541 aa22.6■■□□□ 1.21
SDCBP-201ENST00000260130 PPP2R1AP30153 589 aa22.6■■□□□ 1.21
SDCBP-201ENST00000260130 ZCRB1Q8TBF4 217 aaKnown RBP22.59■■□□□ 1.21
SDCBP-201ENST00000260130 IGSF1Q8N6C5 1336 aa22.59■■□□□ 1.21
SDCBP-201ENST00000260130 OVOS2A0A0G2JMS6 1433 aa22.59■■□□□ 1.21
SDCBP-201ENST00000260130 MIER1Q8N108 512 aa22.58■■□□□ 1.21
SDCBP-201ENST00000260130 PARD3Q8TEW0 1356 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 103.4 ms