RNA–Protein interactions for RNA: ENST00000235958.4

HMGCL-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 5

Gene HMGCL, Length 1,101 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-201ENST00000235958 BTG4Q9NY30 223 aa13.73□□□□□ -0.21
HMGCL-201ENST00000235958 LTN1O94822 1766 aa13.71□□□□□ -0.21
HMGCL-201ENST00000235958 MYBBP1AQ9BQG0 1328 aaKnown RBP13.71□□□□□ -0.21
HMGCL-201ENST00000235958 LTV1Q96GA3 475 aaPredicted RBP13.71□□□□□ -0.21
HMGCL-201ENST00000235958 STRN4Q9NRL3 753 aa13.7□□□□□ -0.22
HMGCL-201ENST00000235958 COL18A1P39060 1754 aa13.7□□□□□ -0.22
HMGCL-201ENST00000235958 RGPD5Q99666 1765 aa13.7□□□□□ -0.22
HMGCL-201ENST00000235958 KIF24Q5T7B8 1368 aa13.7□□□□□ -0.22
HMGCL-201ENST00000235958 CAMTA1Q9Y6Y1 1673 aa13.69□□□□□ -0.22
HMGCL-201ENST00000235958 AFF2P51816 1311 aa13.69□□□□□ -0.22
HMGCL-201ENST00000235958 UNC5CLQ8IV45 518 aa13.69□□□□□ -0.22
HMGCL-201ENST00000235958 ANKRD24Q8TF21 1146 aa13.69□□□□□ -0.22
HMGCL-201ENST00000235958 USP21Q9UK80 565 aa13.69□□□□□ -0.22
HMGCL-201ENST00000235958 INSRP06213 1382 aa13.69□□□□□ -0.22
HMGCL-201ENST00000235958 FLT4P35916 1363 aa13.69□□□□□ -0.22
HMGCL-201ENST00000235958 LARP1Q6PKG0 1096 aaKnown RBP13.68□□□□□ -0.22
HMGCL-201ENST00000235958 MIER1Q8N108 512 aa13.68□□□□□ -0.22
HMGCL-201ENST00000235958 CFAP53Q96M91 514 aa13.68□□□□□ -0.22
HMGCL-201ENST00000235958 COL14A1Q05707 1796 aaKnown RBP13.68□□□□□ -0.22
HMGCL-201ENST00000235958 DIAPH1O60610 1272 aaKnown RBP13.67□□□□□ -0.22
HMGCL-201ENST00000235958 CSB-PGBD3P0DP91 1061 aa13.67□□□□□ -0.22
HMGCL-201ENST00000235958 EIF4A2Q14240 407 aaKnown RBP13.67□□□□□ -0.22
HMGCL-201ENST00000235958 CCDC184Q52MB2 194 aa13.67□□□□□ -0.22
HMGCL-201ENST00000235958 SLIT2O94813 1529 aa13.67□□□□□ -0.22
HMGCL-201ENST00000235958 RTL1A6NKG5 1358 aa13.67□□□□□ -0.22
HMGCL-201ENST00000235958 PEAK1Q9H792 1746 aa13.67□□□□□ -0.22
HMGCL-201ENST00000235958 BCL9LQ86UU0 1499 aa13.67□□□□□ -0.22
HMGCL-201ENST00000235958 IL13P35225 146 aa13.66□□□□□ -0.22
HMGCL-201ENST00000235958 QTRT2Q9H974 415 aaKnown RBP13.66□□□□□ -0.22
HMGCL-201ENST00000235958 NLRP2Q9NX02 1062 aa13.66□□□□□ -0.22
HMGCL-201ENST00000235958 ERBB3P21860 1342 aa13.65□□□□□ -0.22
HMGCL-201ENST00000235958 BLMP54132 1417 aaPredicted RBP13.65□□□□□ -0.22
HMGCL-201ENST00000235958 SMG6Q86US8 1419 aaKnown RBP13.65□□□□□ -0.22
HMGCL-201ENST00000235958 NBPF6Q5VWK0 638 aa13.65□□□□□ -0.22
HMGCL-201ENST00000235958 TOM1L2Q6ZVM7 507 aa13.65□□□□□ -0.22
HMGCL-201ENST00000235958 NBPF4Q96M43 638 aa13.65□□□□□ -0.22
HMGCL-201ENST00000235958 RGS17Q9UGC6 210 aaPredicted RBP13.65□□□□□ -0.22
HMGCL-201ENST00000235958 LMO7Q8WWI1 1683 aa13.65□□□□□ -0.22
HMGCL-201ENST00000235958 WDR17Q8IZU2 1322 aa13.64□□□□□ -0.23
HMGCL-201ENST00000235958 VPS72Q15906 364 aa13.64□□□□□ -0.23
HMGCL-201ENST00000235958 ZNF772Q68DY9 489 aaPredicted RBP13.64□□□□□ -0.23
HMGCL-201ENST00000235958 EYA1Q99502 592 aa13.64□□□□□ -0.23
HMGCL-201ENST00000235958 CCDC9Q9Y3X0 531 aaKnown RBP13.64□□□□□ -0.23
HMGCL-201ENST00000235958 COL5A2P05997 1499 aaPredicted RBP13.63□□□□□ -0.23
HMGCL-201ENST00000235958 CDK12Q9NYV4 1490 aaPredicted RBP13.63□□□□□ -0.23
HMGCL-201ENST00000235958 PHF23Q9BUL5 403 aaPredicted RBP13.63□□□□□ -0.23
HMGCL-201ENST00000235958 CARD10Q9BWT7 1032 aa13.63□□□□□ -0.23
HMGCL-201ENST00000235958 USP35Q9P2H5 1018 aa13.63□□□□□ -0.23
HMGCL-201ENST00000235958 NUDCQ9Y266 331 aa13.63□□□□□ -0.23
HMGCL-201ENST00000235958 NWD2Q9ULI1 1742 aa13.62□□□□□ -0.23
HMGCL-201ENST00000235958 U2SURPO15042 1029 aaKnown RBP13.62□□□□□ -0.23
HMGCL-201ENST00000235958 ILDR2Q71H61 639 aa13.62□□□□□ -0.23
HMGCL-201ENST00000235958 MRS2Q9HD23 443 aa13.62□□□□□ -0.23
HMGCL-201ENST00000235958 TRPC5Q9UL62 973 aaPredicted RBP13.62□□□□□ -0.23
HMGCL-201ENST00000235958 ABCC6O95255 1503 aa13.62□□□□□ -0.23
HMGCL-201ENST00000235958 PLCH1Q4KWH8 1693 aa13.62□□□□□ -0.23
HMGCL-201ENST00000235958 SPATA31A5Q5VU36 1347 aa13.62□□□□□ -0.23
HMGCL-201ENST00000235958 SPATA31A7Q8IWB4 1347 aa13.62□□□□□ -0.23
HMGCL-201ENST00000235958 USHBP1Q8N6Y0 703 aa13.61□□□□□ -0.23
HMGCL-201ENST00000235958 GJD4Q96KN9 370 aaPredicted RBP13.61□□□□□ -0.23
HMGCL-201ENST00000235958 CCER2I3L3R5 266 aa13.6□□□□□ -0.23
HMGCL-201ENST00000235958 U2AF1L5P0DN76 240 aaPredicted RBP13.6□□□□□ -0.23
HMGCL-201ENST00000235958 U2AF1Q01081 240 aaKnown RBP eCLIP13.6□□□□□ -0.23
HMGCL-201ENST00000235958 POTEAQ6S8J7 498 aa13.6□□□□□ -0.23
HMGCL-201ENST00000235958 RGPD2P0DJD1 1756 aa13.6□□□□□ -0.23
HMGCL-201ENST00000235958 SPATA31A1Q5TZJ5 1347 aa13.6□□□□□ -0.23
HMGCL-201ENST00000235958 CRB1P82279 1406 aa13.59□□□□□ -0.23
HMGCL-201ENST00000235958 HMOX1P09601 288 aa13.59□□□□□ -0.23
HMGCL-201ENST00000235958 SULT6B1Q6IMI4 303 aa13.59□□□□□ -0.23
HMGCL-201ENST00000235958 TCP11L2Q8N4U5 519 aa13.59□□□□□ -0.23
HMGCL-201ENST00000235958 PNISRQ8TF01 805 aaKnown RBP13.59□□□□□ -0.23
HMGCL-201ENST00000235958 COL3A1P02461 1466 aaPredicted RBP13.59□□□□□ -0.23
HMGCL-201ENST00000235958 AEBP1Q8IUX7 1158 aa13.58□□□□□ -0.24
HMGCL-201ENST00000235958 ADAMTS8Q9UP79 889 aa13.58□□□□□ -0.24
HMGCL-201ENST00000235958 THRAP3Q9Y2W1 955 aaKnown RBP13.58□□□□□ -0.24
HMGCL-201ENST00000235958 NRAPQ86VF7 1730 aa13.58□□□□□ -0.24
HMGCL-201ENST00000235958 IGSF1Q8N6C5 1336 aa13.58□□□□□ -0.24
HMGCL-201ENST00000235958 ATRNO75882 1429 aa13.57□□□□□ -0.24
HMGCL-201ENST00000235958 SOCS7O14512 581 aa13.57□□□□□ -0.24
HMGCL-201ENST00000235958 RBM6P78332 1123 aaKnown RBP13.57□□□□□ -0.24
HMGCL-201ENST00000235958 ONECUT3O60422 494 aaPredicted RBP13.56□□□□□ -0.24
HMGCL-201ENST00000235958 FCHSD2O94868 740 aa13.56□□□□□ -0.24
HMGCL-201ENST00000235958 RXRBP28702 533 aa13.56□□□□□ -0.24
HMGCL-201ENST00000235958 WDR43Q15061 677 aaKnown RBP eCLIP13.56□□□□□ -0.24
HMGCL-201ENST00000235958 FAM98CQ17RN3 349 aaKnown RBP13.56□□□□□ -0.24
HMGCL-201ENST00000235958 BARGINQ6ZT62 677 aa13.56□□□□□ -0.24
HMGCL-201ENST00000235958 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.56□□□□□ -0.24
HMGCL-201ENST00000235958 IL2RBP14784 551 aa13.55□□□□□ -0.24
HMGCL-201ENST00000235958 RAPGEF4Q8WZA2 1011 aa13.55□□□□□ -0.24
HMGCL-201ENST00000235958 TATP17735 454 aaPredicted RBP13.54□□□□□ -0.24
HMGCL-201ENST00000235958 FAM9BQ8IZU0 186 aa13.54□□□□□ -0.24
HMGCL-201ENST00000235958 RSPH6AQ9H0K4 717 aa13.54□□□□□ -0.24
HMGCL-201ENST00000235958 CDCA7Q9BWT1 371 aaPredicted RBP13.53□□□□□ -0.24
HMGCL-201ENST00000235958 PNNQ9H307 717 aaKnown RBP13.53□□□□□ -0.24
HMGCL-201ENST00000235958 KDRP35968 1356 aa13.53□□□□□ -0.24
HMGCL-201ENST00000235958 FAM208AQ9UK61 1670 aaKnown RBP13.53□□□□□ -0.24
HMGCL-201ENST00000235958 EXOC5O00471 708 aa13.52□□□□□ -0.25
HMGCL-201ENST00000235958 PRKAR2BP31323 418 aa13.52□□□□□ -0.25
HMGCL-201ENST00000235958 SEPT12Q8IYM1 358 aa13.52□□□□□ -0.25
HMGCL-201ENST00000235958 PHACTR3Q96KR7 559 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms