RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 MYO1CO00159 1063 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 ERVK-10P10266 1014 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 PSMC3P17980 439 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 CRADDP78560 199 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 HSPA14Q0VDF9 509 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 LVRNQ6Q4G3 990 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 LRRTM3Q86VH5 581 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 HMGB4Q8WW32 186 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 WWP1Q9H0M0 922 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 GBA3Q9H227 469 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 DNAJC16Q9Y2G8 782 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.91□□□□□ -0.82
LIG3-216ENST00000593099 BEST1O76090 585 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 FSBPO95073 299 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 IFT88Q13099 833 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 SLC8B1Q6J4K2 584 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 HDDC3Q8N4P3 179 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 C3orf58Q8NDZ4 430 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 DDX1Q92499 740 aaKnown RBP9.91□□□□□ -0.82
LIG3-216ENST00000593099 CERS2Q96G23 380 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 ADAM7Q9H2U9 754 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 GIMAP4Q9NUV9 329 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 NINJ2Q9NZG7 142 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 STK38LQ9Y2H1 464 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 MAN2B1O00754 1011 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 AMD1P17707 334 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 IL2P60568 153 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 TEAD4Q15561 434 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 FAM171BQ6P995 826 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 PCDH20Q8N6Y1 951 aaKnown RBP9.9□□□□□ -0.82
LIG3-216ENST00000593099 CD101Q93033 1021 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 HDAC10Q969S8 669 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 GFM2Q969S9 779 aaKnown RBP9.9□□□□□ -0.82
LIG3-216ENST00000593099 TRIM45Q9H8W5 580 aaPredicted RBP9.9□□□□□ -0.82
LIG3-216ENST00000593099 COPS7BQ9H9Q2 264 aaPredicted RBP9.9□□□□□ -0.82
LIG3-216ENST00000593099 TMLHEQ9NVH6 421 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 DTLQ9NZJ0 730 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 EPS15L1Q9UBC2 864 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 HCSTQ9UBK5 93 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 CDH7Q9ULB5 785 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 R3HDM2Q9Y2K5 976 aaKnown RBP9.9□□□□□ -0.82
LIG3-216ENST00000593099 INPP4BO15327 924 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 PFKLP17858 780 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 IFNA8P32881 189 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 NTHL1P78549 312 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 TGM3Q08188 693 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 CUL3Q13618 768 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 MAPRE2Q15555 327 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 INAQ16352 499 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 PTPRNQ16849 979 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 RBFAQ8N0V3 343 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 RASGEF1CQ8N431 466 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 SH2D3CQ8N5H7 860 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 ST13P5Q8NFI4 369 aaPredicted RBP9.9□□□□□ -0.82
LIG3-216ENST00000593099 ZNF398Q8TD17 642 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 EPS8L3Q8TE67 593 aaKnown RBP9.9□□□□□ -0.82
LIG3-216ENST00000593099 AP2M1Q96CW1 435 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 FAM111AQ96PZ2 611 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 EBNA1BP2Q99848 306 aaKnown RBP9.9□□□□□ -0.82
LIG3-216ENST00000593099 P2RY13Q9BPV8 354 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 FAM83DQ9H4H8 585 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 ACTR8Q9H981 624 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 SPHK2Q9NRA0 654 aa9.9□□□□□ -0.82
LIG3-216ENST00000593099 F8W810 466 aa9.9□□□□□ -0.83
LIG3-216ENST00000593099 FECHP22830 423 aa9.9□□□□□ -0.83
LIG3-216ENST00000593099 MC4RP32245 332 aa9.9□□□□□ -0.83
LIG3-216ENST00000593099 DRG2P55039 364 aaKnown RBP9.9□□□□□ -0.83
LIG3-216ENST00000593099 ATXN7L2Q5T6C5 722 aaPredicted RBP9.9□□□□□ -0.83
LIG3-216ENST00000593099 FAM151BQ6UXP7 276 aa9.9□□□□□ -0.83
LIG3-216ENST00000593099 PRUNE1Q86TP1 453 aa9.9□□□□□ -0.83
LIG3-216ENST00000593099 SERPINI1Q99574 410 aa9.9□□□□□ -0.83
LIG3-216ENST00000593099 SH3GL2Q99962 352 aa9.9□□□□□ -0.83
LIG3-216ENST00000593099 CLSTN3Q9BQT9 956 aa9.9□□□□□ -0.83
LIG3-216ENST00000593099 NMUR1Q9HB89 426 aa9.9□□□□□ -0.83
LIG3-216ENST00000593099 TXLNGQ9NUQ3 528 aa9.9□□□□□ -0.83
LIG3-216ENST00000593099 HCFC2Q9Y5Z7 792 aa9.9□□□□□ -0.83
LIG3-216ENST00000593099 MYH9P35579 1960 aaKnown RBP9.9□□□□□ -0.83
LIG3-216ENST00000593099 EDDM13A0A1B0GTR0 161 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 FAM95CA0A1B0GW59 222 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 GMNCA6NCL1 334 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 H0YGN5 161 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 CXCL10P02778 98 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 HOXB2P14652 356 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 CLCN5P51795 746 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 ADAM17P78536 824 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 CCDC142Q17RM4 750 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 SLC44A4Q53GD3 710 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 LRRC8EQ6NSJ5 796 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 DET1Q7L5Y6 550 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 TAS1R1Q7RTX1 841 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 BBS7Q8IWZ6 715 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 OR4L1Q8NH43 312 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 C17orf50Q8WW18 174 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 WDR41Q9HAD4 459 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 CYP4F12Q9HCS2 524 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 VPS51Q9UID3 782 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 CNTN6Q9UQ52 1028 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 L3MBTL1Q9Y468 752 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 A0A096LPK6 155 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 RIPK2O43353 540 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms