RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 OR51B4Q9Y5P0 310 aa14.34□□□□□ -0.11
CUX1-209ENST00000487284 LOC285095A0A1B0GVY8 99 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 TRIM49D1C9J1S8 452 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 TRIM24O15164 1050 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 ZMPSTE24O75844 475 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 KRT38O76015 456 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 ASGR2P07307 311 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 KRT4P19013 534 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 CHRNA4P43681 627 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 PCSK7Q16549 785 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 PKN3Q6P5Z2 889 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 SH2D5Q6ZV89 423 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 RASSF3Q86WH2 238 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 C12orf40Q86WS4 652 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 CPA6Q8N4T0 437 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 PPHLN1Q8NEY8 458 aaKnown RBP14.33□□□□□ -0.12
CUX1-209ENST00000487284 MFSD3Q96ES6 412 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 ALG14Q96F25 216 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 FEM1AQ9BSK4 669 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 CHRAC1Q9NRG0 131 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 ABCB8Q9NUT2 735 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 NKIRAS1Q9NYS0 192 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 TCAF1Q9Y4C2 921 aa14.33□□□□□ -0.12
CUX1-209ENST00000487284 COL4A2P08572 1712 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 CBX4O00257 560 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 SPAG7O75391 227 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 EPOP01588 193 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 MT-ND3P03897 115 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 CR2P20023 1033 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 NMBRP28336 390 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 ARF5P84085 180 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 SLC18A2Q05940 514 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 POU6F1Q14863 301 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 PACS1Q6VY07 963 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 ANKRD42Q8N9B4 389 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 BANPQ8N9N5 519 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 DCAF4L2Q8NA75 395 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 DENND1AQ8TEH3 1009 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 FEM1CQ96JP0 617 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 SERAC1Q96JX3 654 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 LMLNQ96KR4 655 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 RANBP9Q96S59 729 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 CINPQ9BW66 212 aaPredicted RBP14.32□□□□□ -0.12
CUX1-209ENST00000487284 PPANQ9NQ55 473 aaKnown RBP14.32□□□□□ -0.12
CUX1-209ENST00000487284 KIAA1522Q9P206 1035 aaPredicted RBP14.32□□□□□ -0.12
CUX1-209ENST00000487284 ZFATQ9P243 1243 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 THEGQ9P2T0 379 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 VPS28Q9UK41 221 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 INTS6Q9UL03 887 aaKnown RBP14.32□□□□□ -0.12
CUX1-209ENST00000487284 ACTL7AQ9Y615 435 aa14.32□□□□□ -0.12
CUX1-209ENST00000487284 HMX2A2RU54 273 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 TULP3O75386 442 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 CD160O95971 181 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 ATXN1LP0C7T5 689 aaKnown RBP14.31□□□□□ -0.12
CUX1-209ENST00000487284 ERVK-10P10266 1014 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 CA4P22748 312 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 ADRA1DP25100 572 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 GJA4P35212 333 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 CCNFP41002 786 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 SERPINH1P50454 418 aaKnown RBP14.31□□□□□ -0.12
CUX1-209ENST00000487284 SEC24CP53992 1094 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 DNAJC3Q13217 504 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 MSLNQ13421 630 aaPredicted RBP14.31□□□□□ -0.12
CUX1-209ENST00000487284 CYTH1Q15438 398 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 SLC1A5Q15758 541 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 PLEKHG6Q3KR16 790 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 ETFBKMTQ8IXQ9 262 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 APCDD1Q8J025 514 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 SLC44A3Q8N4M1 653 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 NXPE3Q969Y0 559 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 CHFRQ96EP1 664 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 ZNF778Q96MU6 729 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 CPNE1Q99829 537 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 SLC2A11Q9BYW1 496 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 SLC17A6Q9P2U8 582 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 FBXO10Q9UK96 956 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 PSAT1Q9Y617 370 aa14.31□□□□□ -0.12
CUX1-209ENST00000487284 TTC24A2A3L6 582 aaPredicted RBP14.3□□□□□ -0.12
CUX1-209ENST00000487284 GMNCA6NCL1 334 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 LOC730098B7Z3J9 87 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 SNAP91O60641 907 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 RFPL1O75677 317 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 GJB3O75712 270 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 ZWINTO95229 277 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 SLC34A2O95436 690 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 SERPINF2P08697 491 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 HLA-DPA1P20036 260 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 CES1P23141 567 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 GP5P40197 560 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 RGRP47804 291 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 SLC6A11P48066 632 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 DGKGP49619 791 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 WDR4P57081 412 aaKnown RBP14.3□□□□□ -0.12
CUX1-209ENST00000487284 MESP2Q0VG99 397 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 LRRC14Q15048 493 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 ITPRIPL2Q3MIP1 535 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 INO80DQ53TQ3 878 aaPredicted RBP14.3□□□□□ -0.12
CUX1-209ENST00000487284 SIRPB2Q5JXA9 342 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 NAIF1Q69YI7 327 aaPredicted RBP14.3□□□□□ -0.12
CUX1-209ENST00000487284 PDPK2PQ6A1A2 396 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms