RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 PCDH19Q8TAB3 1148 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 ADAMTS16Q8TE57 1224 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 ZFP90Q8TF47 636 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 RORBQ92753 470 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 TRIM63Q969Q1 353 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 VPS33AQ96AX1 596 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 SLCO4A1Q96BD0 722 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 RNF145Q96MT1 663 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 OMDQ99983 421 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 SEZ6LQ9BYH1 1024 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 IL22Q9GZX6 179 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 POMKQ9H5K3 350 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 RAVER2Q9HCJ3 691 aaKnown RBP6.29□□□□□ -1.4
VPS13D-209ENST00000487188 CCM2LQ9NUG4 571 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-209ENST00000487188 FBXO28Q9NVF7 368 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.29□□□□□ -1.4
VPS13D-209ENST00000487188 COX16Q9P0S2 106 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 ZNF221Q9UK13 617 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 ORC6Q9Y5N6 252 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 TNRC6CQ9HCJ0 1690 aaKnown RBP6.28□□□□□ -1.4
VPS13D-209ENST00000487188 B4GAT1O43505 415 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 MICAL2O94851 1124 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 RASAL1O95294 804 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 CST3P01034 146 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-209ENST00000487188 IL7RP16871 459 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 PTPN2P17706 415 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 HMGB2P26583 209 aaKnown RBP6.28□□□□□ -1.4
VPS13D-209ENST00000487188 TM4SF1P30408 202 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 CLK1P49759 484 aaKnown RBP6.28□□□□□ -1.4
VPS13D-209ENST00000487188 ZNF132P52740 706 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 PTPN11Q06124 597 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-209ENST00000487188 SLC13A2Q13183 592 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 SELENBP1Q13228 472 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 SURF1Q15526 300 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 FUT11Q495W5 492 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 STEAP4Q687X5 459 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 TRAF7Q6Q0C0 670 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 PAGE2Q7Z2X7 111 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 THAP5Q7Z6K1 395 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 WDR49Q8IV35 697 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 SCML4Q8N228 414 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 PQLC3Q8N755 202 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 OR52K1Q8NGK4 314 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 TANKQ92844 425 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 EXT2Q93063 718 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 KCTD14Q9BQ13 255 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-209ENST00000487188 FUNDC2Q9BWH2 189 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 ASPSCR1Q9BZE9 553 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 GPN2Q9H9Y4 310 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-209ENST00000487188 PLAC1Q9HBJ0 212 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 SLC38A10Q9HBR0 1119 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 TRIM39Q9HCM9 518 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 GGA3Q9NZ52 723 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 VANGL2Q9ULK5 521 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 ITM2BQ9Y287 266 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 ACOT9Q9Y305 439 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 IRS2Q9Y4H2 1338 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 PDZK1P1A8MUH7 402 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 POLRMTO00411 1230 aaKnown RBP6.28□□□□□ -1.4
VPS13D-209ENST00000487188 TBX1O43435 398 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 BCAS1O75363 584 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-209ENST00000487188 JUNP05412 331 aaKnown RBP6.28□□□□□ -1.4
VPS13D-209ENST00000487188 ALOX12P18054 663 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 PLA2G16P53816 162 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 CDH8P55286 799 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 KCNC4Q03721 635 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 SLC12A1Q13621 1099 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 DGCR6Q14129 220 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 CAPRIN1Q14444 709 aaKnown RBP6.28□□□□□ -1.4
VPS13D-209ENST00000487188 ATP6AP1Q15904 470 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 RC3H1Q5TC82 1133 aaKnown RBP6.28□□□□□ -1.4
VPS13D-209ENST00000487188 ZNF534Q76KX8 674 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 CDAN1Q8IWY9 1227 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 ATP6V0D2Q8N8Y2 350 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 OR7G1Q8NGA0 311 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 ACER1Q8TDN7 264 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 BHMTQ93088 406 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 AGAP2Q99490 1192 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 APOL2Q9BQE5 337 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 ZNF670Q9BS34 389 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 ARMC1Q9NVT9 282 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 POLLQ9UGP5 575 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 HES2Q9Y543 173 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 ATP6AP2A0A1C7CYW4 349 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 NFIBO00712 420 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 SDHDO14521 159 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 XYLBO75191 536 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 NDUFS2O75306 463 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 ATP6AP2O75787 350 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 RAD17O75943 681 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 GPIP06744 558 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 ENDOUP21128 410 aaKnown RBP6.28□□□□□ -1.4
VPS13D-209ENST00000487188 IFNA8P32881 189 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 MAGEA6P43360 314 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 NUMBP49757 651 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 SNX16P57768 344 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 TNFAIP2Q03169 654 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 TNK2Q07912 1038 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 NFYCQ13952 458 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 INAVAQ3KP66 663 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms