RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 DCP2Q8IU60 420 aaKnown RBP14.24□□□□□ -0.13
UPF3A-204ENST00000475218 ZNF548Q8NEK5 533 aaPredicted RBP14.24□□□□□ -0.13
UPF3A-204ENST00000475218 RFFLQ8WZ73 363 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 TRIM11Q96F44 468 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 PCDH12Q9NPG4 1184 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 LRP4O75096 1905 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 BPTFQ12830 3046 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 ARHGAP42A6NI28 874 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 K7ESM1 405 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 SCAMP1O15126 338 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 SERPING1P05155 500 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 CYP1A2P05177 515 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 RARAP10276 462 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 DESP17661 470 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 AMPD1P23109 780 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 CSNK1DP48730 415 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 RAD51Q06609 339 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 TARDBPQ13148 414 aaKnown RBP eCLIP14.24□□□□□ -0.13
UPF3A-204ENST00000475218 ILKQ13418 452 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 UGP2Q16851 508 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 WSCD2Q2TBF2 565 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 PARGQ86W56 976 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 RBFAQ8N0V3 343 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 NIPA2Q8N8Q9 360 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 HCAR2Q8TDS4 363 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 ECHDC3Q96DC8 303 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 MRPL47Q9HD33 250 aaKnown RBP14.24□□□□□ -0.13
UPF3A-204ENST00000475218 RAXQ9Y2V3 346 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 GPSM3Q9Y4H4 160 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 ADAMTS20P59510 1910 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 TTC24A2A3L6 582 aaPredicted RBP14.23□□□□□ -0.13
UPF3A-204ENST00000475218 DFFAO00273 331 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 RIOK3O14730 519 aaKnown RBP14.23□□□□□ -0.13
UPF3A-204ENST00000475218 TM7SF2O76062 418 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 CKMT1AP12532 417 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 GM2AP17900 193 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 IL4RP24394 825 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 MMP12P39900 470 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 IL10RBQ08334 325 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 SLC10A7Q0GE19 358 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 RALGDSQ12967 914 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 ACAP1Q15027 740 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 IRF4Q15306 451 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 KCTD16Q68DU8 428 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 SRLQ86TD4 932 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 PGBD5Q8N414 524 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 FUBP1Q96AE4 644 aaKnown RBP14.23□□□□□ -0.13
UPF3A-204ENST00000475218 APOLD1Q96LR9 279 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 CSPG4P5Q96PW8 444 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 ZWILCHQ9H900 591 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 PCDH18Q9HCL0 1135 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.23□□□□□ -0.13
UPF3A-204ENST00000475218 NLGN3Q9NZ94 848 aa14.23□□□□□ -0.13
UPF3A-204ENST00000475218 IPO11Q9UI26 975 aaKnown RBP14.23□□□□□ -0.13
UPF3A-204ENST00000475218 BZW2Q9Y6E2 419 aaKnown RBP14.23□□□□□ -0.13
UPF3A-204ENST00000475218 TRAFD1O14545 582 aaPredicted RBP14.22□□□□□ -0.13
UPF3A-204ENST00000475218 DAPK3O43293 454 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 GCATO75600 419 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 PALMO75781 387 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 C6P13671 934 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 HNRNPKP61978 463 aaKnown RBP eCLIP14.22□□□□□ -0.13
UPF3A-204ENST00000475218 PDCD7Q8N8D1 485 aaKnown RBP14.22□□□□□ -0.13
UPF3A-204ENST00000475218 FAM181AQ8N9Y4 354 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 CXorf40AQ8TE69 158 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 HSPH1Q92598 858 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 ZNF641Q96N77 438 aaPredicted RBP14.22□□□□□ -0.13
UPF3A-204ENST00000475218 TUBGCP5Q96RT8 1024 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.22□□□□□ -0.13
UPF3A-204ENST00000475218 NUP85Q9BW27 656 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 XPO4Q9C0E2 1151 aaKnown RBP14.22□□□□□ -0.13
UPF3A-204ENST00000475218 DONSONQ9NYP3 566 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 ASXL3Q9C0F0 2248 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 CASC3O15234 703 aaKnown RBP14.22□□□□□ -0.13
UPF3A-204ENST00000475218 MAFKO60675 156 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 CD48P09326 243 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 CDK4P11802 303 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 JUNDP17535 347 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 CR2P20023 1033 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 HNRNPH3P31942 346 aaKnown RBP14.22□□□□□ -0.13
UPF3A-204ENST00000475218 CASP14P31944 242 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 LIG3P49916 1009 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 SUOXP51687 545 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 ARSEP51690 589 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 ZNF135P52742 658 aaPredicted RBP14.22□□□□□ -0.13
UPF3A-204ENST00000475218 PIGHQ14442 188 aaPredicted RBP14.22□□□□□ -0.13
UPF3A-204ENST00000475218 BOLA3Q53S33 107 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 DCBLD1Q8N8Z6 715 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 FAM71BQ8TC56 605 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 PSKH2Q96QS6 385 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 NCAPGQ9BPX3 1015 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 CLPBQ9H078 707 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 ANAPC7Q9UJX3 599 aa14.22□□□□□ -0.13
UPF3A-204ENST00000475218 IGSF10Q6WRI0 2623 aa14.21□□□□□ -0.13
UPF3A-204ENST00000475218 H3BRJ5 948 aa14.21□□□□□ -0.13
UPF3A-204ENST00000475218 CELA2BP08218 269 aaPredicted RBP14.21□□□□□ -0.13
UPF3A-204ENST00000475218 JUPP14923 745 aa14.21□□□□□ -0.13
UPF3A-204ENST00000475218 NSUN2Q08J23 767 aaKnown RBP eCLIP14.21□□□□□ -0.13
UPF3A-204ENST00000475218 ELP6Q0PNE2 266 aa14.21□□□□□ -0.13
UPF3A-204ENST00000475218 MMRN1Q13201 1228 aa14.21□□□□□ -0.13
UPF3A-204ENST00000475218 GRM3Q14832 879 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms