RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 PRPF19Q9UMS4 504 aaKnown RBP10.15□□□□□ -0.79
LIG3-201ENST00000262327 WDR37Q9Y2I8 494 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 SNX13Q9Y5W8 968 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 MBLAC1A4D2B0 266 aaPredicted RBP10.14□□□□□ -0.79
LIG3-201ENST00000262327 SDHDO14521 159 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 SUPT3HO75486 399 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 CABYRO75952 493 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 TMCC1O94876 653 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 CD4P01730 458 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 MYL3P08590 195 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 SMIM10L2AP0DMW4 78 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 SMIM10L2BP0DMW5 78 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 YWHAQP27348 245 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 RPL5P46777 297 aaKnown RBP10.14□□□□□ -0.79
LIG3-201ENST00000262327 C1QTNF8P60827 252 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 CACNB2Q08289 660 aaPredicted RBP10.14□□□□□ -0.79
LIG3-201ENST00000262327 SLC12A1Q13621 1099 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 TWF2Q6IBS0 349 aaKnown RBP10.14□□□□□ -0.79
LIG3-201ENST00000262327 TRIM67Q6ZTA4 783 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 PDZD4Q76G19 769 aaPredicted RBP10.14□□□□□ -0.79
LIG3-201ENST00000262327 ZNF410Q86VK4 478 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 ZBTB8BQ8NAP8 495 aaPredicted RBP10.14□□□□□ -0.79
LIG3-201ENST00000262327 CD99L2Q8TCZ2 262 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 DIS3LQ8TF46 1054 aaKnown RBP10.14□□□□□ -0.79
LIG3-201ENST00000262327 HASPINQ8TF76 798 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 LPPQ93052 612 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 DGCR14Q96DF8 476 aaKnown RBP10.14□□□□□ -0.79
LIG3-201ENST00000262327 CIB1Q99828 191 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 PAAF1Q9BRP4 392 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 IPPQ9Y573 584 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 ZSWIM8A7E2V4 1837 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 TREHO43280 583 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 FKTNO75072 461 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 MOCS2O96007 188 aaPredicted RBP10.14□□□□□ -0.79
LIG3-201ENST00000262327 DARSP14868 501 aaKnown RBP10.14□□□□□ -0.79
LIG3-201ENST00000262327 STMN1P16949 149 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 CKMT2P17540 419 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 CSE1LP55060 971 aaKnown RBP10.14□□□□□ -0.79
LIG3-201ENST00000262327 CDH15P55291 814 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 PSME3P61289 254 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 XIAPP98170 497 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 PURAQ00577 322 aaKnown RBP10.14□□□□□ -0.79
LIG3-201ENST00000262327 PLOD1Q02809 727 aaPredicted RBP10.14□□□□□ -0.79
LIG3-201ENST00000262327 MTX3Q5HYI7 312 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 HMGCLL1Q8TB92 370 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 SH3RF2Q8TEC5 729 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 SLC2A13Q96QE2 648 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 SLC29A1Q99808 456 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 BRD8Q9H0E9 1235 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 CAAP1Q9H8G2 361 aa10.14□□□□□ -0.79
LIG3-201ENST00000262327 TTC3P53804 2025 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 SMIM35A0A1B0GVV1 85 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 PLOD2O00469 737 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 ACOT8O14734 319 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 MSI1O43347 362 aaKnown RBP10.13□□□□□ -0.79
LIG3-201ENST00000262327 DENRO43583 198 aaKnown RBP10.13□□□□□ -0.79
LIG3-201ENST00000262327 TPST1O60507 370 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 ARNTP27540 789 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 NPY2RP49146 381 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 RAB10P61026 200 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 PRAMEP78395 509 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 CAP1Q01518 475 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 SEMA3BQ13214 749 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 SV2CQ496J9 727 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 FBXO48Q5FWF7 155 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 CEP70Q8NHQ1 597 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 PPWD1Q96BP3 646 aaKnown RBP10.13□□□□□ -0.79
LIG3-201ENST00000262327 CNDP1Q96KN2 507 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 RPL10LQ96L21 214 aaKnown RBP10.13□□□□□ -0.79
LIG3-201ENST00000262327 GPR78Q96P69 363 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 MTG1Q9BT17 334 aaPredicted RBP10.13□□□□□ -0.79
LIG3-201ENST00000262327 Q9H521 79 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 GDAP2Q9NXN4 497 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 SFMBT1Q9UHJ3 866 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 PAIP2BQ9ULR5 123 aaKnown RBP10.13□□□□□ -0.79
LIG3-201ENST00000262327 DERAQ9Y315 318 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 PTGDR2Q9Y5Y4 395 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 ANKRD12Q6UB98 2062 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 CASTOR2A6NHX0 329 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 PTGESO14684 152 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 BCAS2O75934 225 aaPredicted RBP10.13□□□□□ -0.79
LIG3-201ENST00000262327 FAM58BPP0C7Q3 252 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 UGT1A6P19224 532 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 SCNN1AP37088 669 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 ETFBP38117 255 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 ADAM17P78536 824 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 MAP7Q14244 749 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 SNX17Q15036 470 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 MGAT5BQ3V5L5 792 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 ITPRIPL1Q6GPH6 555 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 TAC4Q86UU9 113 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 FAM35AQ86V20 835 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 RYBPQ8N488 228 aaPredicted RBP10.13□□□□□ -0.79
LIG3-201ENST00000262327 TMEM102Q8N9M5 508 aaPredicted RBP10.13□□□□□ -0.79
LIG3-201ENST00000262327 LPGAT1Q92604 370 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 LRCH3Q96II8 777 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 SENP8Q96LD8 212 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 MCMBPQ9BTE3 642 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 ZNF385DQ9H6B1 395 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 NOL11Q9H8H0 719 aaKnown RBP10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms