RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 CPEB1Q9BZB8 566 aaKnown RBP12.3□□□□□ -0.44
LIG1-217ENST00000599165 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.3□□□□□ -0.44
LIG1-217ENST00000599165 DKK3Q9UBP4 350 aa12.3□□□□□ -0.44
LIG1-217ENST00000599165 NEUROG3Q9Y4Z2 214 aa12.3□□□□□ -0.44
LIG1-217ENST00000599165 APC2O95996 2303 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 MYLKQ15746 1914 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 ARHGAP42A6NI28 874 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 TSPAN6O43657 245 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 MFAP3LO75121 409 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 THEGLP0DJG4 465 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 DESP17661 470 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 SLC10A7Q0GE19 358 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 CCDC15Q0P6D6 951 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 MMRN1Q13201 1228 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 TBX2Q13207 712 aaPredicted RBP12.29□□□□□ -0.44
LIG1-217ENST00000599165 BOLA3Q53S33 107 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 SLC45A4Q5BKX6 768 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 VPS36Q86VN1 386 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 MARCH9Q86YJ5 346 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 SLC25A45Q8N413 288 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 PGBD5Q8N414 524 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 OR8K1Q8NGG5 319 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 ZNF564Q8TBZ8 553 aaPredicted RBP12.29□□□□□ -0.44
LIG1-217ENST00000599165 ASB12Q8WXK4 309 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 RAB7BQ96AH8 199 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 KLHDC7BQ96G42 594 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 CDC6Q99741 560 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 NCAPGQ9BPX3 1015 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 ABHD10Q9NUJ1 306 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 UCKL1Q9NWZ5 548 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 IP6K2Q9UHH9 426 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 IPO11Q9UI26 975 aaKnown RBP12.29□□□□□ -0.44
LIG1-217ENST00000599165 PNMA8BQ9ULN7 279 aaPredicted RBP12.29□□□□□ -0.44
LIG1-217ENST00000599165 MSRB2Q9Y3D2 182 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 PCDHB9Q9Y5E1 797 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 COL27A1Q8IZC6 1860 aaPredicted RBP12.29□□□□□ -0.44
LIG1-217ENST00000599165 ASXL3Q9C0F0 2248 aa12.29□□□□□ -0.44
LIG1-217ENST00000599165 SSU72P8A0A1W2PR75 194 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 TTC24A2A3L6 582 aaPredicted RBP12.28□□□□□ -0.44
LIG1-217ENST00000599165 H3BRJ5 948 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 DFFAO00273 331 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 TRIM38O00635 465 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 TNFSF14O43557 240 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 MAFKO60675 156 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 SDC3O75056 442 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 PROSCO94903 275 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 TRIM16O95361 564 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 PRKCGP05129 697 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 CR2P20023 1033 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 AKT2P31751 481 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 IGFALSP35858 605 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 CSNK1DP48730 415 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 ZNF135P52742 658 aaPredicted RBP12.28□□□□□ -0.44
LIG1-217ENST00000599165 ADKP55263 362 aaKnown RBP12.28□□□□□ -0.44
LIG1-217ENST00000599165 PFN3P60673 137 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 IL10RBQ08334 325 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 FZD2Q14332 565 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 SUZ12Q15022 739 aaKnown RBP12.28□□□□□ -0.44
LIG1-217ENST00000599165 UNQ6494/PRO21346Q6UXR6 183 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 KYAT3Q6YP21 454 aaKnown RBP12.28□□□□□ -0.44
LIG1-217ENST00000599165 Q6ZSR6 202 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 CAMK1DQ8IU85 385 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 EID2Q8N6I1 236 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 SKA1Q96BD8 255 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 CENPTQ96BT3 561 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 ECHDC3Q96DC8 303 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 FEM1CQ96JP0 617 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 LENG8Q96PV6 779 aaPredicted RBP12.28□□□□□ -0.44
LIG1-217ENST00000599165 SPTLC3Q9NUV7 552 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 KLHL11Q9NVR0 708 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 KLF15Q9UIH9 416 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 HS3ST3A1Q9Y663 406 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 PKD1L2Q7Z442 2459 aa12.28□□□□□ -0.44
LIG1-217ENST00000599165 TRAFD1O14545 582 aaPredicted RBP12.27□□□□□ -0.45
LIG1-217ENST00000599165 YKT6O15498 198 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 DAPK3O43293 454 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 CBFA2T2O43439 604 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 MMP20O60882 483 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 PROS1P07225 676 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 GM2AP17900 193 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 ARRB1P49407 418 aaPredicted RBP12.27□□□□□ -0.45
LIG1-217ENST00000599165 SEMG2Q02383 582 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 RALGDSQ12967 914 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 DNAJC3Q13217 504 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 TRIM14Q14142 442 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 DPYSL3Q14195 570 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 IHHQ14623 411 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 UGP2Q16851 508 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 TMEM52BQ4KMG9 183 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 SARM1Q6SZW1 724 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 NYAP1Q6ZVC0 841 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 SRLQ86TD4 932 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 TTC7BQ86TV6 843 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 OXR1Q8N573 874 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 TP53I13Q8NBR0 393 aaPredicted RBP12.27□□□□□ -0.45
LIG1-217ENST00000599165 PCDH19Q8TAB3 1148 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 FUBP1Q96AE4 644 aaKnown RBP12.27□□□□□ -0.45
LIG1-217ENST00000599165 PSKH2Q96QS6 385 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 SUV39H2Q9H5I1 410 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 SP110Q9HB58 689 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms