RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 EIF2B5Q13144 721 aaKnown RBP17.95■□□□□ 0.46
HDDC3-205ENST00000559898 SMTNL2Q2TAL5 461 aa17.95■□□□□ 0.46
HDDC3-205ENST00000559898 PARP15Q460N3 678 aa17.95■□□□□ 0.46
HDDC3-205ENST00000559898 INO80DQ53TQ3 878 aaPredicted RBP17.95■□□□□ 0.46
HDDC3-205ENST00000559898 PPP6R3Q5H9R7 873 aaPredicted RBP17.95■□□□□ 0.46
HDDC3-205ENST00000559898 HES3Q5TGS1 186 aa17.95■□□□□ 0.46
HDDC3-205ENST00000559898 AFMIDQ63HM1 303 aa17.95■□□□□ 0.46
HDDC3-205ENST00000559898 KYAT3Q6YP21 454 aaKnown RBP17.95■□□□□ 0.46
HDDC3-205ENST00000559898 RFX8Q6ZV50 586 aa17.95■□□□□ 0.46
HDDC3-205ENST00000559898 TTC7BQ86TV6 843 aa17.95■□□□□ 0.46
HDDC3-205ENST00000559898 VPS36Q86VN1 386 aa17.95■□□□□ 0.46
HDDC3-205ENST00000559898 RBFAQ8N0V3 343 aa17.95■□□□□ 0.46
HDDC3-205ENST00000559898 TSEN2Q8NCE0 465 aaKnown RBP17.95■□□□□ 0.46
HDDC3-205ENST00000559898 FUBP1Q96AE4 644 aaKnown RBP17.95■□□□□ 0.46
HDDC3-205ENST00000559898 ARHGEF26Q96DR7 871 aa17.95■□□□□ 0.46
HDDC3-205ENST00000559898 ISCUQ9H1K1 167 aa17.95■□□□□ 0.46
HDDC3-205ENST00000559898 CWC15Q9P013 229 aaKnown RBP17.95■□□□□ 0.46
HDDC3-205ENST00000559898 UBA2Q9UBT2 640 aaPredicted RBP17.95■□□□□ 0.46
HDDC3-205ENST00000559898 SHROOM3Q8TF72 1996 aa17.94■□□□□ 0.46
HDDC3-205ENST00000559898 ZSCAN5CA6NGD5 496 aaPredicted RBP17.94■□□□□ 0.46
HDDC3-205ENST00000559898 NEMP1O14524 444 aa17.94■□□□□ 0.46
HDDC3-205ENST00000559898 FGF10O15520 208 aaPredicted RBP17.94■□□□□ 0.46
HDDC3-205ENST00000559898 TSPAN6O43657 245 aa17.94■□□□□ 0.46
HDDC3-205ENST00000559898 MAGEC1O60732 1142 aa17.94■□□□□ 0.46
HDDC3-205ENST00000559898 IGSF6O95976 241 aa17.94■□□□□ 0.46
HDDC3-205ENST00000559898 HOXB3P14651 431 aaPredicted RBP17.94■□□□□ 0.46
HDDC3-205ENST00000559898 CKMT2P17540 419 aa17.94■□□□□ 0.46
HDDC3-205ENST00000559898 AIF1P55008 147 aa17.94■□□□□ 0.46
HDDC3-205ENST00000559898 CCDC15Q0P6D6 951 aa17.94■□□□□ 0.46
HDDC3-205ENST00000559898 TARDBPQ13148 414 aaKnown RBP eCLIP17.94■□□□□ 0.46
HDDC3-205ENST00000559898 PDE1CQ14123 709 aaPredicted RBP17.94■□□□□ 0.46
HDDC3-205ENST00000559898 KCTD16Q68DU8 428 aa17.94■□□□□ 0.46
HDDC3-205ENST00000559898 CAMK1DQ8IU85 385 aa17.94■□□□□ 0.46
HDDC3-205ENST00000559898 GALNT15Q8N3T1 639 aa17.94■□□□□ 0.46
HDDC3-205ENST00000559898 CENPTQ96BT3 561 aa17.94■□□□□ 0.46
HDDC3-205ENST00000559898 LRIG1Q96JA1 1093 aa17.94■□□□□ 0.46
HDDC3-205ENST00000559898 THAP2Q9H0W7 228 aa17.94■□□□□ 0.46
HDDC3-205ENST00000559898 PCDHGA1Q9Y5H4 931 aa17.94■□□□□ 0.46
HDDC3-205ENST00000559898 LRP4O75096 1905 aa17.94■□□□□ 0.46
HDDC3-205ENST00000559898 SPTY2D1-AS1A0A0U1RR47 76 aa17.93■□□□□ 0.46
HDDC3-205ENST00000559898 PFN3P60673 137 aa17.93■□□□□ 0.46
HDDC3-205ENST00000559898 INSM1Q01101 510 aaPredicted RBP17.93■□□□□ 0.46
HDDC3-205ENST00000559898 SGCGQ13326 291 aa17.93■□□□□ 0.46
HDDC3-205ENST00000559898 DPYSQ14117 519 aa17.93■□□□□ 0.46
HDDC3-205ENST00000559898 TCEA2Q15560 299 aa17.93■□□□□ 0.46
HDDC3-205ENST00000559898 KLHL40Q2TBA0 621 aa17.93■□□□□ 0.46
HDDC3-205ENST00000559898 TP53I13Q8NBR0 393 aaPredicted RBP17.93■□□□□ 0.46
HDDC3-205ENST00000559898 OR4C6Q8NH72 309 aa17.93■□□□□ 0.46
HDDC3-205ENST00000559898 RAB7BQ96AH8 199 aa17.93■□□□□ 0.46
HDDC3-205ENST00000559898 CRELD1Q96HD1 420 aa17.93■□□□□ 0.46
HDDC3-205ENST00000559898 LENG8Q96PV6 779 aaPredicted RBP17.93■□□□□ 0.46
HDDC3-205ENST00000559898 OSBPL1AQ9BXW6 950 aa17.93■□□□□ 0.46
HDDC3-205ENST00000559898 ITPR1Q14643 2758 aa17.93■□□□□ 0.46
HDDC3-205ENST00000559898 APC2O95996 2303 aa17.92■□□□□ 0.46
HDDC3-205ENST00000559898 A0A087X0T9 212 aa17.92■□□□□ 0.46
HDDC3-205ENST00000559898 DFFAO00273 331 aa17.92■□□□□ 0.46
HDDC3-205ENST00000559898 SCAMP1O15126 338 aa17.92■□□□□ 0.46
HDDC3-205ENST00000559898 CELA2BP08218 269 aaPredicted RBP17.92■□□□□ 0.46
HDDC3-205ENST00000559898 FAM228BP0C875 321 aa17.92■□□□□ 0.46
HDDC3-205ENST00000559898 AMPD1P23109 780 aa17.92■□□□□ 0.46
HDDC3-205ENST00000559898 ACP1P24666 158 aa17.92■□□□□ 0.46
HDDC3-205ENST00000559898 NDST2P52849 883 aa17.92■□□□□ 0.46
HDDC3-205ENST00000559898 UBASH3AP57075 661 aa17.92■□□□□ 0.46
HDDC3-205ENST00000559898 ZNF211Q13398 564 aaPredicted RBP17.92■□□□□ 0.46
HDDC3-205ENST00000559898 C1orf61Q13536 156 aa17.92■□□□□ 0.46
HDDC3-205ENST00000559898 TDRD12Q587J7 1177 aaKnown RBP17.92■□□□□ 0.46
HDDC3-205ENST00000559898 FIGNQ5HY92 759 aa17.92■□□□□ 0.46
HDDC3-205ENST00000559898 ZNF548Q8NEK5 533 aaPredicted RBP17.92■□□□□ 0.46
HDDC3-205ENST00000559898 FNIP1Q8TF40 1166 aa17.92■□□□□ 0.46
HDDC3-205ENST00000559898 APOLD1Q96LR9 279 aa17.92■□□□□ 0.46
HDDC3-205ENST00000559898 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.92■□□□□ 0.46
HDDC3-205ENST00000559898 ZWILCHQ9H900 591 aa17.92■□□□□ 0.46
HDDC3-205ENST00000559898 PCDH12Q9NPG4 1184 aa17.92■□□□□ 0.46
HDDC3-205ENST00000559898 IFNKQ9P0W0 207 aa17.92■□□□□ 0.46
HDDC3-205ENST00000559898 GPSM3Q9Y4H4 160 aa17.92■□□□□ 0.46
HDDC3-205ENST00000559898 K7ESM1 405 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 FPGTO14772 594 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 PRPSAP2O60256 369 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 GCATO75600 419 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 RNF8O76064 485 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 CSF2P04141 144 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 GYPCP04921 128 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 JUPP14923 745 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 NME1P15531 152 aaKnown RBP17.91■□□□□ 0.46
HDDC3-205ENST00000559898 PTPRRQ15256 657 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 IRF4Q15306 451 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 TMEM52BQ4KMG9 183 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 SRLQ86TD4 932 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 TMPRSS12Q86WS5 348 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 HNRNPLLQ8WVV9 542 aaKnown RBP17.91■□□□□ 0.46
HDDC3-205ENST00000559898 CASKIN2Q8WXE0 1202 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 HSPH1Q92598 858 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 CPEB1Q9BZB8 566 aaKnown RBP17.91■□□□□ 0.46
HDDC3-205ENST00000559898 EDEM3Q9BZQ6 932 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 SUV39H2Q9H5I1 410 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 DKK3Q9UBP4 350 aa17.91■□□□□ 0.46
HDDC3-205ENST00000559898 ANKRD11Q6UB99 2663 aaPredicted RBP17.91■□□□□ 0.46
HDDC3-205ENST00000559898 ASXL3Q9C0F0 2248 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 TSPAN11A1L157 253 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 ARHGAP42A6NI28 874 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 142.6 ms