RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 B3GALNT2Q8NCR0 500 aa11.93□□□□□ -0.5
VIPAS39-211ENST00000557658 KCTD13Q8WZ19 329 aa11.93□□□□□ -0.5
VIPAS39-211ENST00000557658 CCDC126Q96EE4 140 aa11.93□□□□□ -0.5
VIPAS39-211ENST00000557658 HSPBAP1Q96EW2 488 aa11.93□□□□□ -0.5
VIPAS39-211ENST00000557658 TCF12Q99081 682 aa11.93□□□□□ -0.5
VIPAS39-211ENST00000557658 UNKQ9C0B0 810 aaKnown RBP11.93□□□□□ -0.5
VIPAS39-211ENST00000557658 TMEM181Q9P2C4 612 aa11.93□□□□□ -0.5
VIPAS39-211ENST00000557658 ZNF510Q9Y2H8 683 aa11.93□□□□□ -0.5
VIPAS39-211ENST00000557658 SPTLC1O15269 473 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 AKAP10O43572 662 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 HUS1O60921 280 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 TIPRLO75663 272 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 BMP2P12643 396 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 PNPLA4P41247 253 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 ARL13BQ3SXY8 428 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 C6orf10Q5SRN2 563 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 ARMCX2Q7L311 632 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 MFSD6LQ8IWD5 586 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 PACRGLQ8N7B6 248 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 PPHLN1Q8NEY8 458 aaKnown RBP11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 HEXDCQ8WVB3 486 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 EIF2AQ9BY44 585 aaKnown RBP11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 OSBPL2Q9H1P3 480 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 WDR6Q9NNW5 1121 aaKnown RBP11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 RNF19AQ9NV58 838 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 TBCCD1Q9NVR7 557 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 DUS2Q9NX74 493 aaKnown RBP11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 ZNHIT2Q9UHR6 403 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 PTBP2Q9UKA9 531 aaKnown RBP11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 FBXW11Q9UKB1 542 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 AAR2Q9Y312 384 aaKnown RBP11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 PPP2R3BQ9Y5P8 575 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 ZNF839A8K0R7 811 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 PLOD2O00469 737 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 NRP2O60462 931 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 USP2O75604 605 aaPredicted RBP11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 CKMT2P17540 419 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 HDCP19113 662 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 HOXA11P31270 313 aaPredicted RBP11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 EPHX2P34913 555 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 CD151P48509 253 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 TAF6P49848 677 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 TKTL1P51854 596 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 CDH15P55291 814 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 TAS2R39P59534 338 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 PRAMEP78395 509 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 PRKCQQ04759 706 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 POU6F1Q14863 301 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 ZBED5Q49AG3 693 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 LAYNQ6UX15 382 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 CATSPER4Q7RTX7 472 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 ERMP1Q7Z2K6 904 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 CLVS1Q8IUQ0 354 aaPredicted RBP11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 TNIP2Q8NFZ5 429 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 OR2T34Q8NGX1 318 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 OR2T3Q8NH03 318 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 TFAP2CQ92754 450 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 RANBP9Q96S59 729 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 TBL1YQ9BQ87 522 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 CDHR5Q9HBB8 845 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 MRM3Q9HC36 420 aaKnown RBP11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 ANLNQ9NQW6 1124 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 ARMC1Q9NVT9 282 aa11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 PDCD11Q14690 1871 aaKnown RBP11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 FNDC1Q4ZHG4 1894 aaPredicted RBP11.92□□□□□ -0.5
VIPAS39-211ENST00000557658 SH3PXD2BA1X283 911 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 NEMP2A6NFY4 417 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 ZNF701M0R085 212 aaPredicted RBP11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 NFKBIEO00221 500 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 CLDN5O00501 218 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 SOCS2O14508 198 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 BEST1O76090 585 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 RECQL4O94761 1208 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 ZNF286BP0CG31 522 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 LRPAP1P30533 357 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 C1QTNF8P60827 252 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 POU4F1Q01851 419 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 FAM83EQ2M2I3 478 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 SV2CQ496J9 727 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 DALRD3Q5D0E6 543 aaKnown RBP11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 GJC2Q5T442 439 aaPredicted RBP11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 DUS1LQ6P1R4 473 aaKnown RBP11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 ALKAL1Q6UXT8 129 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 OTOP3Q7RTS5 596 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 CUZD1Q86UP6 607 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 ERO1BQ86YB8 467 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 PLEKHG4BQ96PX9 1271 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 PDGFDQ9GZP0 370 aaPredicted RBP11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 GJD2Q9UKL4 321 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 GINS2Q9Y248 185 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 HEMK1Q9Y5R4 338 aaPredicted RBP11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 TNS1Q9HBL0 1735 aaKnown RBP11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 TRIM64CA6NLI5 447 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 I6L893 689 aaPredicted RBP11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 MAGEB3O15480 346 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 XPOTO43592 962 aaKnown RBP11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 SLC1A2P43004 574 aa11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 ARCN1P48444 511 aaKnown RBP11.91□□□□□ -0.5
VIPAS39-211ENST00000557658 SLC7A2P52569 658 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms