RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 TMEM121Q9BTD3 319 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 GPR174Q9BXC1 333 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 POLR1EQ9GZS1 481 aaKnown RBP9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 NEUROG2Q9H2A3 272 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 UBP1Q9NZI7 540 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 GGT7Q9UJ14 662 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 HCN4Q9Y3Q4 1203 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 PCDHGC4Q9Y5F7 938 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 PGRMC1O00264 195 aaKnown RBP9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 SPINT1O43278 529 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 POP4O95707 220 aaKnown RBP9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 MT-CYBP00156 380 aaPredicted RBP9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 MMP2P08253 660 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 ITGB7P26010 798 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 PSMB4P28070 264 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 CD6P30203 668 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 HOXA6P31267 233 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 CASQ1P31415 396 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 HSPA9P38646 679 aaKnown RBP9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 KCNJ1P48048 391 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 PTPN5P54829 565 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 ADPRHP54922 357 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 AP1S1P61966 158 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 PPP2CBP62714 309 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 PPP2CAP67775 309 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 RPL6Q02878 288 aaKnown RBP9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 BCL2L1Q07817 233 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 XRCC4Q13426 336 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 OASLQ15646 514 aaKnown RBP9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 PCSK7Q16549 785 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 USP39Q53GS9 565 aaKnown RBP9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 HS1BP3Q53T59 392 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 CFAP58Q5T655 872 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 PIP5KL1Q5T9C9 394 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 FAM46CQ5VWP2 391 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 TTC27Q6P3X3 843 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 CEP68Q76N32 757 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 TMEFF1Q8IYR6 380 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 PRELID2Q8N945 189 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 GLIS1Q8NBF1 620 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 TTC13Q8NBP0 860 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 ZBTB44Q8NCP5 570 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 OR14C36Q8NHC7 312 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 GAB3Q8WWW8 586 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 ZNF592Q92610 1267 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 FATE1Q969F0 183 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 TEKT5Q96M29 485 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 GORASP1Q9BQQ3 440 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 C6orf106Q9H6K1 298 aaPredicted RBP9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 ATP13A3Q9H7F0 1226 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 GLOD4Q9HC38 313 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 PRM3Q9NNZ6 103 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 ITM2CQ9NQX7 267 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 DYRK4Q9NR20 520 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 RSPH14Q9UHP6 348 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 ATP8A1Q9Y2Q0 1164 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 RAI2Q9Y5P3 530 aa9.9□□□□□ -0.82
TOPBP1-209ENST00000513818 CCDC163A0A0D9SF12 145 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 A0A0U1RQS6 177 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 BCLAF3A2AJT9 711 aaKnown RBP9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 GOLGA8CPA6NN73 597 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 C16orf96A6NNT2 1141 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 A8MX80 341 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 PDE2AO00408 941 aaPredicted RBP9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 LILRB5O75023 590 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 ZNF217O75362 1048 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 SEMA4FO95754 770 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 CPP00450 1065 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 ZSCAN5DPP0CG00 497 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 ADRB3P13945 408 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 CTPS1P17812 591 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 TCP1P17987 556 aaKnown RBP9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 SERPINA4P29622 427 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 CSNK1DP48730 415 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 NEK3P51956 506 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 TAS2R38P59533 333 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 SKOR1P84550 965 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 ZBTB16Q05516 673 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 RAD51Q06609 339 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 ZNF33AQ06730 810 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 OLIG2Q13516 323 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 BYSLQ13895 437 aaKnown RBP9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 SIM2Q14190 667 aaPredicted RBP9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 GALNT3Q14435 633 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 TMEM259Q4ZIN3 620 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 TEX44Q53QW1 395 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 ZNF805Q5CZA5 627 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 SYCP2LQ5T4T6 812 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 PAPD7Q5XG87 772 aaKnown RBP9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 ERN2Q76MJ5 926 aaKnown RBP9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 PID1Q7Z2X4 250 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 KDELC2Q7Z4H8 507 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 PRPF39Q86UA1 669 aaKnown RBP9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 PLPP6Q8IY26 295 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 TMIEQ8NEW7 156 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 SNX19Q92543 992 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 KLK6Q92876 244 aa9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 NKD2Q969F2 451 aaPredicted RBP9.89□□□□□ -0.83
TOPBP1-209ENST00000513818 OXNAD1Q96HP4 312 aaPredicted RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms