RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 PTGER3P43115 390 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 GLUD2P49448 558 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 GPC3P51654 580 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 DGKEP52429 567 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 NAPAP54920 295 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 ELLP55199 621 aaPredicted RBP4.25□□□□□ -1.73
USP54-217ENST00000498213 ADKP55263 362 aaKnown RBP4.25□□□□□ -1.73
USP54-217ENST00000498213 CLDN6P56747 220 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 EVCP57679 992 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 RPS7P62081 194 aaKnown RBP4.25□□□□□ -1.73
USP54-217ENST00000498213 KRT85P78386 507 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 TLE1Q04724 770 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 GFPT1Q06210 699 aaPredicted RBP4.25□□□□□ -1.73
USP54-217ENST00000498213 MXD4Q14582 209 aaPredicted RBP4.25□□□□□ -1.73
USP54-217ENST00000498213 KARSQ15046 597 aaKnown RBP4.25□□□□□ -1.73
USP54-217ENST00000498213 IGFBP7Q16270 282 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 PFKFB3Q16875 520 aaPredicted RBP4.25□□□□□ -1.73
USP54-217ENST00000498213 SLC35G1Q2M3R5 365 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 Q4G0T1 1027 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 PPM1LQ5SGD2 360 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 KIAA1614Q5VZ46 1190 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 FBXO42Q6P3S6 717 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 APOA5Q6Q788 366 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 VITQ6UXI7 678 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 MRPL10Q7Z7H8 261 aaKnown RBP4.25□□□□□ -1.73
USP54-217ENST00000498213 PRIMA1Q86XR5 153 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 SRBD1Q8N5C6 995 aaKnown RBP4.25□□□□□ -1.73
USP54-217ENST00000498213 DEFB119Q8N690 84 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 BOLLQ8N9W6 283 aaKnown RBP4.25□□□□□ -1.73
USP54-217ENST00000498213 LEMD2Q8NC56 503 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 SIMC1Q8NDZ2 872 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 IL17RDQ8NFM7 739 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 CSGALNACT1Q8TDX6 532 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 ZNF668Q96K58 619 aaPredicted RBP4.25□□□□□ -1.73
USP54-217ENST00000498213 FAM20AQ96MK3 541 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 ZNF577Q9BSK1 485 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 RNF26Q9BY78 433 aaPredicted RBP4.25□□□□□ -1.73
USP54-217ENST00000498213 ZFP14Q9HCL3 533 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 TRPV5Q9NQA5 729 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 TBC1D13Q9NVG8 400 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 INTS13Q9NVM9 706 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 DNMT3BQ9UBC3 853 aaKnown RBP4.25□□□□□ -1.73
USP54-217ENST00000498213 PRG3Q9Y2Y8 225 aaPredicted RBP4.25□□□□□ -1.73
USP54-217ENST00000498213 IPPQ9Y573 584 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 PCDHGA9Q9Y5G4 932 aaKnown RBP4.25□□□□□ -1.73
USP54-217ENST00000498213 PCDHGA8Q9Y5G5 932 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 PCDHGA7Q9Y5G6 932 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 PCDHGA6Q9Y5G7 932 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 PCDHGA3Q9Y5H0 932 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 COL4A3BPQ9Y5P4 624 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 ICE1Q9Y2F5 2266 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 ABCA7Q8IZY2 2146 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 NBASA2RRP1 2371 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 GON4LQ3T8J9 2241 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 LOXHD1Q8IVV2 1947 aa4.25□□□□□ -1.73
USP54-217ENST00000498213 CYP3A7-CYP3A51PA0A087WV96 503 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 PRAMEF33A0A0G2JMD5 474 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 SMCO2A6NFE2 343 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 F8W810 466 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 YY2O15391 372 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 ZBTB43O43298 467 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 PRPF3O43395 683 aaKnown RBP4.24□□□□□ -1.73
USP54-217ENST00000498213 PRAMEF10O60809 474 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 DDHD2O94830 711 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 SNUPNO95149 360 aaKnown RBP4.24□□□□□ -1.73
USP54-217ENST00000498213 SBK3P0C264 359 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 XRCC6P12956 609 aaKnown RBP eCLIP4.24□□□□□ -1.73
USP54-217ENST00000498213 XBP1P17861 261 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 PSMC3P17980 439 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 CYP3A7P24462 503 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 SLC6A4P31645 630 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 CLK3P49761 638 aaKnown RBP4.24□□□□□ -1.73
USP54-217ENST00000498213 PSMC5P62195 406 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 AMPD3Q01432 767 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 AKAP17AQ02040 695 aaKnown RBP4.24□□□□□ -1.73
USP54-217ENST00000498213 ITGB3BPQ13352 177 aaPredicted RBP4.24□□□□□ -1.73
USP54-217ENST00000498213 ZNF169Q14929 603 aaPredicted RBP4.24□□□□□ -1.73
USP54-217ENST00000498213 NECTIN1Q15223 517 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 CCDC142Q17RM4 750 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 SLC5A9Q2M3M2 681 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 BMP2KLQ5H9B9 411 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 LIN9Q5TKA1 542 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 SP5Q6BEB4 398 aaPredicted RBP4.24□□□□□ -1.73
USP54-217ENST00000498213 SWSAP1Q6NVH7 229 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 CPLX2Q6PUV4 134 aaKnown RBP4.24□□□□□ -1.73
USP54-217ENST00000498213 OTUD6AQ7L8S5 288 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 HEATR3Q7Z4Q2 680 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 TTC30AQ86WT1 665 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 PLA2G4DQ86XP0 818 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 CCDC60Q8IWA6 550 aaPredicted RBP4.24□□□□□ -1.73
USP54-217ENST00000498213 RNF168Q8IYW5 571 aaPredicted RBP4.24□□□□□ -1.73
USP54-217ENST00000498213 GALNT15Q8N3T1 639 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 LNX2Q8N448 690 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 CAMKK1Q8N5S9 505 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 TOR1AIP2Q8NFQ8 470 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 SETD7Q8WTS6 366 aaKnown RBP4.24□□□□□ -1.73
USP54-217ENST00000498213 RLN3Q8WXF3 142 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 SNX19Q92543 992 aa4.24□□□□□ -1.73
USP54-217ENST00000498213 FUBP1Q96AE4 644 aaKnown RBP4.24□□□□□ -1.73
USP54-217ENST00000498213 NXPE2Q96DL1 559 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms