RNA–Protein interactions for RNA: ENST00000497580.5

GAPVD1-220, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 2

Gene GAPVD1, Length 3,720 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-220ENST00000497580 DOK1Q99704 481 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 CNPY3Q9BT09 278 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 PRELID1Q9Y255 219 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 FAM155AB1AL88 458 aaPredicted RBP13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 H0Y858 1186 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 BCAS1O75363 584 aaPredicted RBP13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 MMP10P09238 476 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 CHRM3P20309 590 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 CCND2P30279 289 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 RPS9P46781 194 aaKnown RBP13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 TRNP1Q6NT89 227 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 MMAAQ8IVH4 418 aaKnown RBP13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 SDCCAG3Q96C92 435 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 FCRL3Q96P31 734 aaPredicted RBP13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 RMDN3Q96TC7 470 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 CPNE1Q99829 537 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 ATP13A3Q9H7F0 1226 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 FBRSL1Q9HCM7 1045 aaKnown RBP13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 ANKEF1Q9NU02 776 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 ANKMY1Q9P2S6 941 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 CAPNS1P04632 268 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 SNRPB2P08579 225 aaKnown RBP13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 TGM2P21980 687 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 TRIM32Q13049 653 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 CLEC4FQ8N1N0 589 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 PTCD2Q8WV60 388 aaKnown RBP13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 RBBP8Q99708 897 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 FUNDC2Q9BWH2 189 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 TBC1D13Q9NVG8 400 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 EXD2Q9NVH0 621 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 TMEM9Q9P0T7 183 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 ARHGAP28Q9P2N2 729 aa13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 PNMA8BQ9ULN7 279 aaPredicted RBP13.18□□□□□ -0.3
GAPVD1-220ENST00000497580 BCLAF3A2AJT9 711 aaKnown RBP13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 MED7O43513 233 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 MICAL2O94851 1124 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 ALOX5P09917 674 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 PCNAP12004 261 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 BMP2P12643 396 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 IL4RP24394 825 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 YWHAQP27348 245 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 NUMBP49757 651 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 CLK3P49761 638 aaKnown RBP13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 ZNF143P52747 638 aaPredicted RBP13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 PHC1P78364 1004 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 DGCR6Q14129 220 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 RFTN1Q14699 578 aaPredicted RBP13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 CCNYL2Q5T2Q4 361 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 GRTP1Q5TC63 336 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 AGAP7PQ5VUJ5 663 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 CCDC103Q8IW40 242 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 POC5Q8NA72 575 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 USP33Q8TEY7 942 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 TMEM174Q8WUU8 243 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 EFHD2Q96C19 240 aaPredicted RBP13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 TWNKQ96RR1 684 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 TRIT1Q9H3H1 467 aaKnown RBP13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 LTB4R2Q9NPC1 389 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 BAG5Q9UL15 447 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 B3GNT3Q9Y2A9 372 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 IFT52Q9Y366 437 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 KCNK1O00180 336 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 SDHDO14521 159 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 NRP2O60462 931 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 HSPA1AP0DMV8 641 aaKnown RBP13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 HSPA1BP0DMV9 641 aaKnown RBP13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 TMBIM6P55061 237 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 IFITM2Q01629 132 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 PRKCEQ02156 737 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 HERC3Q15034 1050 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 PID1Q7Z2X4 250 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 LGI2Q8N0V4 545 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 MCPH1Q8NEM0 835 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 LILRB4Q8NHJ6 448 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 MASTLQ96GX5 879 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 WDR12Q9GZL7 423 aaKnown RBP13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 MRGBPQ9NV56 204 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 PCDHA10Q9Y5I2 948 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 CCRL2O00421 344 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 TPSB2P20231 275 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 MAGEA3P43357 314 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 TPSAB1Q15661 275 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 UGT3A1Q6NUS8 523 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 CCDC81Q6ZN84 652 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 SP8Q8IXZ3 490 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 CPSF7Q8N684 471 aaKnown RBP13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 ARNTL2Q8WYA1 636 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 VPS39Q96JC1 886 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 C17orf80Q9BSJ5 609 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 PTPRHQ9HD43 1115 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 GIMAP2Q9UG22 337 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 NUDT5Q9UKK9 219 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 CNTN6Q9UQ52 1028 aa13.17□□□□□ -0.3
GAPVD1-220ENST00000497580 IDH3BO43837 385 aa13.16□□□□□ -0.3
GAPVD1-220ENST00000497580 CHRNB1P11230 501 aa13.16□□□□□ -0.3
GAPVD1-220ENST00000497580 SDC4P31431 198 aa13.16□□□□□ -0.3
GAPVD1-220ENST00000497580 HLCSP50747 726 aa13.16□□□□□ -0.3
GAPVD1-220ENST00000497580 JAK3P52333 1124 aa13.16□□□□□ -0.3
GAPVD1-220ENST00000497580 LIMK2P53671 638 aa13.16□□□□□ -0.3
GAPVD1-220ENST00000497580 IFRD2Q12894 506 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms