RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	FAM189A1	O60320	539 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	RPP40	O75818	363 aa	Known RBP	4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	DNAJB5	O75953	348 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	ALDH1A2	O94788	518 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	SEC24A	O95486	1093 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	CAVIN2	O95810	425 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	POLB	P06746	335 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	MYL4	P12829	197 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	RAC2	P15153	192 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	ATF2	P15336	505 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	ALOX15	P16050	662 aa	Predicted RBP	4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	CYP11B2	P19099	503 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	CCNE1	P24864	410 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	HOXA6	P31267	233 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	BRCC3	P46736	316 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	ALDH1A3	P47895	512 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	AARS	P49588	968 aa	Known RBP eCLIP	4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	TUB	P50607	506 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	CLCNKB	P51801	687 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	PER3	P56645	1201 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	WNT3A	P56704	352 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	SESN2	P58004	480 aa	Predicted RBP	4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	ELAVL2	Q12926	359 aa	Known RBP	4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	TOP3A	Q13472	1001 aa	Predicted RBP	4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	PRPF4B	Q13523	1007 aa	Known RBP	4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	MAPK6	Q16659	721 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	DCAF4L1	Q3SXM0	396 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	FAM78A	Q5JUQ0	283 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	PRAMEF14	Q5SWL7	426 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	NT5DC1	Q5TFE4	455 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	FYB2	Q5VWT5	728 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	TRIM68	Q6AZZ1	485 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	CFAP161	Q6P656	301 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	PDXDC1	Q6P996	788 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	BORA	Q6PGQ7	559 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	CPLX2	Q6PUV4	134 aa	Known RBP	4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	VIT	Q6UXI7	678 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	BEND5	Q7L4P6	421 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	ZNF572	Q7Z3I7	529 aa	Predicted RBP	4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	CACNA2D4	Q7Z3S7	1137 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	LRRTM4	Q86VH4	590 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	TMC8	Q8IU68	726 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	ZBTB8OS	Q8IWT0	167 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	NECAB1	Q8N987	351 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	BEST2	Q8NFU1	509 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	WDR48	Q8TAF3	677 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	ABHD4	Q8TB40	342 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	CFHR4	Q92496	578 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	FAM3C	Q92520	227 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	ELSPBP1	Q96BH3	223 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	RSPRY1	Q96DX4	576 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	TCEAL4	Q96EI5	215 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	CHFR	Q96EP1	664 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	MCRS1	Q96EZ8	462 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	ZSCAN31	Q96LW9	406 aa	Predicted RBP	4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	UROC1	Q96N76	676 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	ZMAT2	Q96NC0	199 aa	Known RBP	4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	CAMK1G	Q96NX5	476 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	C2orf40	Q9H1Z8	148 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	PRORY	Q9H606	182 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	SERHL	Q9NQF3	203 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	RASSF1	Q9NS23	344 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	TUBGCP4	Q9UGJ1	667 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	ITGB1BP2	Q9UKP3	347 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	ZDHHC8	Q9ULC8	765 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	RUVBL1	Q9Y265	456 aa	Known RBP	4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	GDA	Q9Y2T3	454 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	INSL5	Q9Y5Q6	135 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	PTPRD	P23468	1912 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	SETD2	Q9BYW2	2564 aa	Predicted RBP	4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	COL6A6	A6NMZ7	2263 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	BOD1L1	Q8NFC6	3051 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981		A0A087WV48	116 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981		A0A087WWL8	130 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	SMIM28	A0A1B0GU29	152 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	BCLAF3	A2AJT9	711 aa	Known RBP	4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	ANTXRL	A6NF34	631 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	SYN3	O14994	580 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	THAP12	O43422	761 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	ZNF500	O60304	480 aa	Predicted RBP	4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	TADA2A	O75478	443 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	B3GAT3	O94766	335 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	GAST	P01350	101 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	OR52Z1	P0C646	297 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	XRCC6	P12956	609 aa	Known RBP eCLIP	4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	KCNE1	P15382	129 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	XBP1	P17861	261 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	ITGB7	P26010	798 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	CNTF	P26441	200 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	RPA1	P27694	616 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	MCM7	P33993	719 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	OR1D2	P34982	312 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	TXK	P42681	527 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	CARS	P49589	748 aa	Known RBP	4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	CREB5	Q02930	508 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	ORC2	Q13416	577 aa	Predicted RBP	4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	ZNF568	Q3ZCX4	644 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	ARHGAP15	Q53QZ3	475 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	COLEC12	Q5KU26	742 aa		4.53	□□□□□ -1.68
VPS52-222	ENST00000495981	ATF7IP2	Q5U623	682 aa		4.53	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms