RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 TRIM39Q9HCM9 518 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 VTA1Q9NP79 307 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 ARHGEF4Q9NR80 690 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 DECR2Q9NUI1 292 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 PAQR5Q9NXK6 330 aaPredicted RBP5.53□□□□□ -1.52
VPS41-209ENST00000457055 TMOD2Q9NZR1 351 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 MORF4L1Q9UBU8 362 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 SEC63Q9UGP8 760 aaKnown RBP5.53□□□□□ -1.52
VPS41-209ENST00000457055 TRPS1Q9UHF7 1281 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 VANGL2Q9ULK5 521 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 SLC8A2Q9UPR5 921 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 RUVBL1Q9Y265 456 aaKnown RBP5.53□□□□□ -1.52
VPS41-209ENST00000457055 PCDHB6Q9Y5E3 794 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 PCDHGA9Q9Y5G4 932 aaKnown RBP5.53□□□□□ -1.52
VPS41-209ENST00000457055 PCDHGA8Q9Y5G5 932 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 PCDHGA7Q9Y5G6 932 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 PCDHGA6Q9Y5G7 932 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 PCDHGA3Q9Y5H0 932 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 PCDHGA2Q9Y5H1 932 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 SNX13Q9Y5W8 968 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 CYP46A1Q9Y6A2 500 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 FPGT-TNNI3KV9GXZ4 949 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 TNS2Q63HR2 1409 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 RPRD2Q5VT52 1461 aaKnown RBP5.52□□□□□ -1.53
VPS41-209ENST00000457055 FYCO1Q9BQS8 1478 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 TRAV20A0A0B4J274 112 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 LOC100506127A0A0U1RQW1 187 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 BLACEA4D250 179 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 SH2B2O14492 632 aaPredicted RBP5.52□□□□□ -1.53
VPS41-209ENST00000457055 TOMM70O94826 608 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 IPO13O94829 963 aaKnown RBP5.52□□□□□ -1.53
VPS41-209ENST00000457055 CCNDBP1O95273 360 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 APOEP02649 317 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 THP07101 528 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 PFKMP08237 780 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 CLTAP09496 248 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 PABPC4LP0CB38 370 aaKnown RBP5.52□□□□□ -1.53
VPS41-209ENST00000457055 CALM1P0DP23 149 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 CALM2P0DP24 149 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 CALM3P0DP25 149 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 CCDC130P13994 396 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 MAPK4P31152 587 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 GP5P40197 560 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 MLH1P40692 756 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 ALDH9A1P49189 494 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 GATMP50440 423 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 CCR9P51686 369 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 ATP12AP54707 1039 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 RAC3P60763 192 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 RAB14P61106 215 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 ELP6Q0PNE2 266 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 DYNC1I2Q13409 638 aaKnown RBP5.52□□□□□ -1.53
VPS41-209ENST00000457055 CUL3Q13618 768 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 RGS21Q2M5E4 152 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 ADCK5Q3MIX3 580 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 BMP2KLQ5H9B9 411 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 TCP11X2Q5H9J9 407 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 TEX35Q5T0J7 233 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 LIN9Q5TKA1 542 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 NSMFQ6X4W1 530 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 MACC1Q6ZN28 852 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 CATSPERGQ6ZRH7 1159 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 TMTC3Q6ZXV5 915 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 BRAPQ7Z569 592 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 ADGRG6Q86SQ4 1221 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 MOGAT3Q86VF5 341 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 SGMS1Q86VZ5 419 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 SCUBE1Q8IWY4 988 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 SLC43A2Q8N370 569 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 MPP5Q8N3R9 675 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 ANKFN1Q8N957 763 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 MRPL43Q8N983 215 aaKnown RBP5.52□□□□□ -1.53
VPS41-209ENST00000457055 FAM133AQ8N9E0 248 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 ZNF671Q8TAW3 534 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 LRTOMTQ8WZ04 291 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 ZKSCAN4Q969J2 545 aaPredicted RBP5.52□□□□□ -1.53
VPS41-209ENST00000457055 VPS33AQ96AX1 596 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 SIPA1Q96FS4 1042 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 PDLIM5Q96HC4 596 aaKnown RBP5.52□□□□□ -1.53
VPS41-209ENST00000457055 TUBGCP5Q96RT8 1024 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 PLIN2Q99541 437 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 B3GNT5Q9BYG0 378 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 PARD6BQ9BYG5 372 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 STK33Q9BYT3 514 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 CD244Q9BZW8 370 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 PITHD1Q9GZP4 211 aaPredicted RBP5.52□□□□□ -1.53
VPS41-209ENST00000457055 IPPKQ9H8X2 491 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 ERVK-5Q9HDB9 667 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 SLC39A2Q9NP94 309 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 RAB20Q9NX57 234 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 PKD2L2Q9NZM6 624 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 DNAJB9Q9UBS3 223 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 NDOR1Q9UHB4 597 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 ING1Q9UK53 422 aaPredicted RBP5.52□□□□□ -1.53
VPS41-209ENST00000457055 NUDCQ9Y266 331 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 R3HDM2Q9Y2K5 976 aaKnown RBP5.52□□□□□ -1.53
VPS41-209ENST00000457055 CLDN16Q9Y5I7 305 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 BZW2Q9Y6E2 419 aaKnown RBP5.52□□□□□ -1.53
VPS41-209ENST00000457055 CROCC2H7BZ55 1655 aa5.52□□□□□ -1.53
VPS41-209ENST00000457055 SH3TC1Q8TE82 1336 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms