RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 EFCAB9A8MZ26 197 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 TFRCP02786 760 aaKnown RBP12.69□□□□□ -0.38
COL6A3-203ENST00000353578 FGFR3P22607 806 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 ADNP2Q6IQ32 1131 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 KCTD1Q719H9 257 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 LZTR1Q8N653 840 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 MFSD2AQ8NA29 543 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 IPMKQ8NFU5 416 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 RC3H2Q9HBD1 1191 aaKnown RBP12.69□□□□□ -0.38
COL6A3-203ENST00000353578 TBC1D24Q9ULP9 559 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 PCDHA11Q9Y5I1 949 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 PLEKP08567 350 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-203ENST00000353578 ITGALP20701 1170 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 GMPSP49915 693 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-203ENST00000353578 KCNA10Q16322 511 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 ANKS6Q68DC2 871 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 STOML3Q8TAV4 291 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 RAB19A4D1S5 217 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 BTBD19C9JJ37 291 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 SMIM22K7EJ46 135 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 SPARCP09486 303 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 LCN1P31025 176 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 ALDH9A1P49189 494 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 SPOUT1Q5T280 376 aaKnown RBP12.68□□□□□ -0.38
COL6A3-203ENST00000353578 SH3RF3Q8TEJ3 882 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-203ENST00000353578 MID1IP1Q9NPA3 183 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 PTGFRNQ9P2B2 879 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 REXO2Q9Y3B8 237 aaKnown RBP12.68□□□□□ -0.38
COL6A3-203ENST00000353578 PLA2G6O60733 806 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 AVILO75366 819 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 YWHAQP27348 245 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 SLC7A1P30825 629 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 FGL1Q08830 312 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 WDR45BQ5MNZ6 344 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 SPATA19Q7Z5L4 167 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 URGCPQ8TCY9 931 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 RIT2Q99578 217 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 UNC93B1Q9H1C4 597 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 FAM237AA0A1B0GTK4 181 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 AGTR1P30556 359 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 ACSL1P33121 698 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 CRHR1P34998 444 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 RIOX2Q8IUF8 465 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 SLC30A2Q9BRI3 323 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 FARSBQ9NSD9 589 aaKnown RBP12.68□□□□□ -0.38
COL6A3-203ENST00000353578 ARMC1Q9NVT9 282 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 HTR3EA5X5Y0 456 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 KLHL22Q53GT1 634 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 DUPD1Q68J44 220 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 OR5T2Q8NGG2 359 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 ZNF570Q96NI8 536 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 OR2AT4A6NND4 320 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 FADS2P1A8MWK0 482 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 KDM4BO94953 1096 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 IFNA6P05013 189 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 ITGB3P05106 788 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 IL7P13232 177 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 ZNF37AP17032 561 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-203ENST00000353578 TCEAL6Q6IPX3 200 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 OXER1Q8TDS5 423 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 PPA2Q9H2U2 334 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 ATXN3LQ9H3M9 355 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 CLCA2Q9UQC9 943 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 A0A088AWK7 358 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 ZNF10P21506 573 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-203ENST00000353578 GRIA2P42262 883 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 ADAM15Q13444 863 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 MED30Q96HR3 178 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 CGREF1Q99674 301 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 HERC2P3Q9BVR0 1158 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 ACSL5Q9ULC5 683 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 B3GNT3Q9Y2A9 372 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 CAPN8A6NHC0 703 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 GPRC6AQ5T6X5 926 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 GPRASP2Q96D09 838 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 CHST12Q9NRB3 414 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 PRKAG3Q9UGI9 489 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 RBMX2Q9Y388 322 aaKnown RBP12.68□□□□□ -0.38
COL6A3-203ENST00000353578 PTPAQ15257 358 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 ZYG11AQ6WRX3 759 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 KCTD8Q6ZWB6 473 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 STAG3L4Q8TBR4 150 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 TMEM5Q9Y2B1 443 aa12.68□□□□□ -0.38
COL6A3-203ENST00000353578 CTBP2P56545 445 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 TRUB1Q8WWH5 349 aaKnown RBP12.67□□□□□ -0.38
COL6A3-203ENST00000353578 TLCD1Q96CP7 247 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 NCKAP1Q9Y2A7 1128 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 FAM47E-STBD1D6RA91 191 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 ITGB6P18564 788 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 CASP1P29466 404 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 MNDAP41218 407 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 SEPHS1P49903 392 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 MAPKAPK3Q16644 382 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 CATSPER4Q7RTX7 472 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 SLC9A6Q92581 669 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 ITCHQ96J02 903 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 TPD52L3Q96J77 140 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 APOL5Q9BWW9 433 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 HMGXB4Q9UGU5 601 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 PCDHGB3Q9Y5G1 929 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms