RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 POMKQ9H5K3 350 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 TUT1Q9H6E5 874 aaKnown RBP13.57□□□□□ -0.24
SKA3-202ENST00000314759 CCDC167Q9P0B6 97 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 CD300AQ9UGN4 299 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 IPO11Q9UI26 975 aaKnown RBP13.57□□□□□ -0.24
SKA3-202ENST00000314759 SARDHQ9UL12 918 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 PAIP2BQ9ULR5 123 aaKnown RBP13.57□□□□□ -0.24
SKA3-202ENST00000314759 FAM95CA0A1B0GW59 222 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 MTSS1O43312 755 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 HTRA2O43464 458 aaPredicted RBP13.57□□□□□ -0.24
SKA3-202ENST00000314759 ZNF189O75820 626 aaPredicted RBP13.57□□□□□ -0.24
SKA3-202ENST00000314759 RECQL4O94761 1208 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 CKMT2P17540 419 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 SLC7A1P30825 629 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 SLC5A3P53794 718 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 C1QTNF8P60827 252 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 GALNT2Q10471 571 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 AGKQ53H12 422 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 DALRD3Q5D0E6 543 aaKnown RBP13.57□□□□□ -0.24
SKA3-202ENST00000314759 C6orf10Q5SRN2 563 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 NAPEPLDQ6IQ20 393 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 SLC27A1Q6PCB7 646 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 PAQR9Q6ZVX9 377 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 PIWIL4Q7Z3Z4 852 aaKnown RBP13.57□□□□□ -0.24
SKA3-202ENST00000314759 OSTM1Q86WC4 334 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 RMND5BQ96G75 393 aaPredicted RBP13.57□□□□□ -0.24
SKA3-202ENST00000314759 SLC9A7Q96T83 725 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 UHRF1Q96T88 793 aaPredicted RBP13.57□□□□□ -0.24
SKA3-202ENST00000314759 GOLGA2P5Q9HBQ8 144 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 SPAG4Q9NPE6 437 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 MRPL40Q9NQ50 206 aaKnown RBP13.57□□□□□ -0.24
SKA3-202ENST00000314759 PNPLA3Q9NST1 481 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 TBCCD1Q9NVR7 557 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 GDAP2Q9NXN4 497 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 RBPJLQ9UBG7 517 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 ZNHIT2Q9UHR6 403 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 CDC14AQ9UNH5 594 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 SNX10Q9Y5X0 201 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 SHROOM3Q8TF72 1996 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 PSMD12O00232 456 aaPredicted RBP13.56□□□□□ -0.24
SKA3-202ENST00000314759 NPR3P17342 541 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 DNAJB1P25685 340 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 ARNTP27540 789 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 PFKPQ01813 784 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 TRAP1Q12931 704 aaKnown RBP13.56□□□□□ -0.24
SKA3-202ENST00000314759 FASTKQ14296 549 aaKnown RBP13.56□□□□□ -0.24
SKA3-202ENST00000314759 PKN3Q6P5Z2 889 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 RPS27LQ71UM5 84 aaKnown RBP13.56□□□□□ -0.24
SKA3-202ENST00000314759 CROCCP3Q8IVE0 287 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 CNTN4Q8IWV2 1026 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 SIX6OS1Q8N1H7 587 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 SPATA22Q8NHS9 363 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 HEXDCQ8WVB3 486 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 DPF3Q92784 378 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 NTAN1Q96AB6 310 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 C16orf70Q9BSU1 422 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 DUS2Q9NX74 493 aaKnown RBP13.56□□□□□ -0.24
SKA3-202ENST00000314759 KLK14Q9P0G3 267 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 SQORQ9Y6N5 450 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 KANSL1LA0AUZ9 987 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 HCAR3P49019 387 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 TAS2R39P59534 338 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 SCAPQ12770 1279 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 LAMC2Q13753 1193 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 POU6F1Q14863 301 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 NHSL2Q5HYW2 709 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 FAM219BQ5XKK7 198 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 ZNF280DQ6N043 979 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 ESRP1Q6NXG1 681 aaKnown RBP13.56□□□□□ -0.24
SKA3-202ENST00000314759 LAYNQ6UX15 382 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 FIBCD1Q8N539 461 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 FAM110BQ8TC76 370 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 C12orf43Q96C57 262 aaKnown RBP13.56□□□□□ -0.24
SKA3-202ENST00000314759 ISOC1Q96CN7 298 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 DUS3LQ96G46 650 aaKnown RBP13.56□□□□□ -0.24
SKA3-202ENST00000314759 TNIP3Q96KP6 325 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 VAT1Q99536 393 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 MRPL57Q9BQC6 102 aaKnown RBP13.56□□□□□ -0.24
SKA3-202ENST00000314759 ANKRD60Q9BZ19 345 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 BRD8Q9H0E9 1235 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 FBXW11Q9UKB1 542 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 CNOT6Q9ULM6 557 aaKnown RBP13.56□□□□□ -0.24
SKA3-202ENST00000314759 UBQLN1Q9UMX0 589 aaKnown RBP13.56□□□□□ -0.24
SKA3-202ENST00000314759 TLL2Q9Y6L7 1015 aa13.56□□□□□ -0.24
SKA3-202ENST00000314759 YJEFN3A6XGL0 299 aa13.55□□□□□ -0.24
SKA3-202ENST00000314759 UBDO15205 165 aa13.55□□□□□ -0.24
SKA3-202ENST00000314759 PORP16435 677 aaPredicted RBP13.55□□□□□ -0.24
SKA3-202ENST00000314759 YBX3P16989 372 aaKnown RBP eCLIP13.55□□□□□ -0.246e-7■■■□□ 18.1
SKA3-202ENST00000314759 KCNA5P22460 613 aa13.55□□□□□ -0.24
SKA3-202ENST00000314759 ARCN1P48444 511 aaKnown RBP13.55□□□□□ -0.24
SKA3-202ENST00000314759 TKTL1P51854 596 aa13.55□□□□□ -0.24
SKA3-202ENST00000314759 PRAMEP78395 509 aa13.55□□□□□ -0.24
SKA3-202ENST00000314759 UGP2Q16851 508 aa13.55□□□□□ -0.24
SKA3-202ENST00000314759 ZBTB49Q6ZSB9 765 aa13.55□□□□□ -0.24
SKA3-202ENST00000314759 CLEC20AQ6ZU45 233 aa13.55□□□□□ -0.24
SKA3-202ENST00000314759 NCCRP1Q6ZVX7 275 aaPredicted RBP13.55□□□□□ -0.24
SKA3-202ENST00000314759 FASTKD5Q7L8L6 764 aaKnown RBP13.55□□□□□ -0.24
SKA3-202ENST00000314759 LIMS2Q7Z4I7 341 aa13.55□□□□□ -0.24
SKA3-202ENST00000314759 USP33Q8TEY7 942 aa13.55□□□□□ -0.24
SKA3-202ENST00000314759 SLC35B4Q969S0 331 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms