RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 ST3GAL5Q9UNP4 418 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 FAM172BPA6NC97 362 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 G3V2T6 193 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 RPLP2P05387 115 aaKnown RBP11.46□□□□□ -0.58
PTPN4-201ENST00000263708 GHRP10912 638 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 CBX3Q13185 183 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 PUS10Q3MIT2 529 aaKnown RBP11.46□□□□□ -0.58
PTPN4-201ENST00000263708 ASB8Q9H765 288 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 PRDM8Q9NQV8 689 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 TRDMT1O14717 391 aaKnown RBP11.46□□□□□ -0.58
PTPN4-201ENST00000263708 UBOX5O94941 541 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 CATP04040 527 aaKnown RBP11.46□□□□□ -0.58
PTPN4-201ENST00000263708 BDNFP23560 247 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 NDUFV1P49821 464 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 TRIM40Q6P9F5 258 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 APTXQ7Z2E3 356 aaKnown RBP11.46□□□□□ -0.58
PTPN4-201ENST00000263708 C12orf56Q8IXR9 622 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 UBR7Q8N806 425 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 METTL21AQ8WXB1 218 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 BRD9Q9H8M2 597 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 TSPAN16Q9UKR8 245 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 TNPO3Q9Y5L0 923 aaKnown RBP11.46□□□□□ -0.58
PTPN4-201ENST00000263708 TRIM38O00635 465 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 CASKO14936 926 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 CBFA2T3O75081 653 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 RASGRP1O95267 797 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 YBX3P16989 372 aaKnown RBP eCLIP11.45□□□□□ -0.58
PTPN4-201ENST00000263708 PEX6Q13608 980 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 WDR49Q8IV35 697 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 ZZZ3Q8IYH5 903 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 HTR3CQ8WXA8 447 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 SLC47A1Q96FL8 570 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 COPS4Q9BT78 406 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 MROH8Q9H579 483 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 MAGEC1O60732 1142 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 RPA1P27694 616 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 PRKAA2P54646 552 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 PSMD5Q16401 504 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 OLFML1Q6UWY5 402 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 ARHGAP22Q7Z5H3 698 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 PMEPA1Q969W9 287 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 HIST1H2AAQ96QV6 131 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 GTF3C4Q9UKN8 822 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 UGT2B17O75795 530 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 ATP6V1G2O95670 118 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 GYPCP04921 128 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 S100A2P29034 98 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 GRIK4Q16099 956 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 NAIF1Q69YI7 327 aaPredicted RBP11.45□□□□□ -0.58
PTPN4-201ENST00000263708 APBB2Q92870 758 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 PER1O15534 1290 aaPredicted RBP11.45□□□□□ -0.58
PTPN4-201ENST00000263708 ZNF730Q6ZMV8 503 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 DENND6BQ8NEG7 585 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 TKTL2Q9H0I9 626 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 FDPSP14324 419 aaKnown RBP11.45□□□□□ -0.58
PTPN4-201ENST00000263708 CTNNB1P35222 781 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 RAB27AP51159 221 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 BROXQ5VW32 411 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 C3orf67Q6ZVT6 689 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 LNX2Q8N448 690 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 DNAJB14Q8TBM8 379 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 MAML3Q96JK9 1138 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 FDXACB1Q9BRP7 624 aaPredicted RBP11.45□□□□□ -0.58
PTPN4-201ENST00000263708 POLR1EQ9GZS1 481 aaKnown RBP11.45□□□□□ -0.58
PTPN4-201ENST00000263708 BARX2Q9UMQ3 279 aaPredicted RBP11.45□□□□□ -0.58
PTPN4-201ENST00000263708 CYP17A1P05093 508 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 DENND1CQ8IV53 801 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 AP1S3Q96PC3 154 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 TPP1O14773 563 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 SERPINB7O75635 380 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 MANFP55145 182 aaKnown RBP11.45□□□□□ -0.58
PTPN4-201ENST00000263708 CWF19L1Q69YN2 538 aaKnown RBP11.45□□□□□ -0.58
PTPN4-201ENST00000263708 SYN2Q92777 582 aaPredicted RBP11.45□□□□□ -0.58
PTPN4-201ENST00000263708 AIF1LQ9BQI0 150 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 RNF121Q9H920 327 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 ASAH2Q9NR71 780 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 CLIC5Q9NZA1 410 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 PCDHA3Q9Y5H8 950 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 IGSF1Q8N6C5 1336 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 SLC9A3R1O14745 358 aaPredicted RBP11.45□□□□□ -0.58
PTPN4-201ENST00000263708 TBL1XO60907 577 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 NDST1P52848 882 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 CROCCP3Q8IVE0 287 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 GPR135Q8IZ08 494 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 ASB2Q96Q27 587 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 CITED4Q96RK1 184 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 ATP13A3Q9H7F0 1226 aa11.45□□□□□ -0.58
PTPN4-201ENST00000263708 CPSF1Q10570 1443 aaKnown RBP11.45□□□□□ -0.58
PTPN4-201ENST00000263708 LSM8O95777 96 aaKnown RBP11.44□□□□□ -0.58
PTPN4-201ENST00000263708 PTPN11Q06124 597 aaPredicted RBP11.44□□□□□ -0.58
PTPN4-201ENST00000263708 SLC30A6Q6NXT4 461 aa11.44□□□□□ -0.58
PTPN4-201ENST00000263708 KBTBD8Q8NFY9 601 aa11.44□□□□□ -0.58
PTPN4-201ENST00000263708 ZHX1-C8orf76Q96EF9 292 aa11.44□□□□□ -0.58
PTPN4-201ENST00000263708 AP3M1Q9Y2T2 418 aa11.44□□□□□ -0.58
PTPN4-201ENST00000263708 GDI2P50395 445 aaKnown RBP11.44□□□□□ -0.58
PTPN4-201ENST00000263708 LY6KQ17RY6 165 aa11.44□□□□□ -0.58
PTPN4-201ENST00000263708 RBM23Q86U06 439 aaKnown RBP11.44□□□□□ -0.58
PTPN4-201ENST00000263708 TRPV1Q8NER1 839 aa11.44□□□□□ -0.58
PTPN4-201ENST00000263708 RELTQ969Z4 430 aa11.44□□□□□ -0.58
PTPN4-201ENST00000263708 CDC42BPBQ9Y5S2 1711 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms