RNA–Protein interactions for RNA: ENST00000561395.5

TPM1-231, Transcript of tropomyosin 1, human

TSL 5

Gene TPM1, Length 673 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-231	ENST00000561395		A0A1W2PRU2	124 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	TCAF2	A6NFQ2	919 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	SMIM23	A6NLE4	172 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	ERI2	A8K979	691 aa	Known RBP	7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	C1QTNF9B	B2RNN3	333 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	TRDMT1	O14717	391 aa	Known RBP	7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	RGS16	O15492	202 aa	Predicted RBP	7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	FOXD2	O60548	495 aa	Predicted RBP	7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	XYLB	O75191	536 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	SPAG6	O75602	509 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	RFPL2	O75678	378 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	HLA-DQB2	P05538	268 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	CKM	P06732	381 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	RET	P07949	1114 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	POU2F2	P09086	479 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	HNRNPA1	P09651	372 aa	Known RBP eCLIP	7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	C1QTNF9	P0C862	333 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	MYL4	P12829	197 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	HDC	P19113	662 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	CD72	P21854	359 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	DDX6	P26196	483 aa	Known RBP eCLIP	7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	CCR2	P41597	374 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	GRIA1	P42261	906 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	IFNAR2	P48551	515 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	SGSH	P51688	502 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	RPS24	P62847	133 aa	Known RBP	7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	ZXDB	P98169	803 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	PFKP	Q01813	784 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	TNK2	Q07912	1038 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	IL10RB	Q08334	325 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	MTM1	Q13496	603 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	SERINC3	Q13530	473 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	POLD3	Q15054	466 aa	Predicted RBP	7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	CSRP2	Q16527	193 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	LONRF1	Q17RB8	773 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	KCTD16	Q68DU8	428 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	KCTD11	Q693B1	232 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	IL31	Q6EBC2	164 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	UNQ6494/PRO21346	Q6UXR6	183 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	PRR23B	Q6ZRT6	265 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	CFAP52	Q8N1V2	620 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	MPP5	Q8N3R9	675 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	ZNF454	Q8N9F8	522 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	FAM76A	Q8TAV0	307 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	SHKBP1	Q8TBC3	707 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	USP33	Q8TEY7	942 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	FGF14	Q92915	247 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	TLCD1	Q96CP7	247 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	OXNAD1	Q96HP4	312 aa	Predicted RBP	7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	SIGLEC10	Q96LC7	697 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	PPP1R2P1	Q96PQ5	205 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	FCRL5	Q96RD9	977 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	CCDC77	Q9BR77	488 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	FAM126A	Q9BYI3	521 aa	Predicted RBP	7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	MAGEH1	Q9H213	219 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	ATXN3L	Q9H3M9	355 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	LRRC40	Q9H9A6	602 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	PPCS	Q9HAB8	311 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	SP110	Q9HB58	689 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	GLOD4	Q9HC38	313 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	HCFC1R1	Q9NWW0	138 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	LGALS13	Q9UHV8	139 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	LSM7	Q9UK45	103 aa	Known RBP	7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	LHX6	Q9UPM6	363 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	MRPS17	Q9Y2R5	130 aa	Known RBP	7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	TTLL3	Q9Y4R7	772 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	MYLK	Q15746	1914 aa		7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	FLNB	O75369	2602 aa	Known RBP	7.64	□□□□□ -1.19
TPM1-231	ENST00000561395	DMXL2	Q8TDJ6	3036 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	TLDC2	A0PJX2	215 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	ILVBL	A1L0T0	632 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395		J3KR12	359 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	PSMD3	O43242	534 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	TSPAN3	O60637	253 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	PRAMEF11	O60813	436 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	CDH16	O75309	829 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	MOSPD3	O75425	235 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	CP	P00450	1065 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	AGT	P01019	485 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	RHO	P08100	348 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	GSTA2	P09210	222 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	GJA1	P17302	382 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	PTPN2	P17706	415 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	NR1D1	P20393	614 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	TARS	P26639	723 aa	Known RBP	7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	HOXD9	P28356	352 aa	Predicted RBP	7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	GCA	P28676	217 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	SSTR1	P30872	391 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	ACVRL1	P37023	503 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	MMP13	P45452	471 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	SLCO1A2	P46721	670 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	RENBP	P51606	427 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	GYS2	P54840	703 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	GNA12	Q03113	381 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	OLIG2	Q13516	323 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	HNRNPD	Q14103	355 aa	Known RBP	7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	SPARCL1	Q14515	664 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	PRPSAP1	Q14558	356 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	KLHL38	Q2WGJ6	581 aa		7.63	□□□□□ -1.19
TPM1-231	ENST00000561395	SLC44A4	Q53GD3	710 aa		7.63	□□□□□ -1.19

Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms