RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 TULP3O75386 442 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 GLP2RO95838 553 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 KLKB1P03952 638 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 SHBGP04278 402 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 ELFN1P0C7U0 828 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 UGT1A6P19224 532 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 ITGALP20701 1170 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 UGT1A1P22309 533 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 UGT1A4P22310 534 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 PTPN3P26045 913 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 UGT1A3P35503 534 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 UGT1A5P35504 534 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 CTSOP43234 321 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 SLC6A11P48066 632 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 ECT2LQ008S8 904 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 CAV1Q03135 178 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 DLX2Q07687 328 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 GRSF1Q12849 480 aaKnown RBP eCLIP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 LMAN2Q12907 356 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 SLC10A2Q12908 348 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 ZBTB17Q13105 803 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 MPP3Q13368 585 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 PDGFRLQ15198 375 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 PTPRRQ15256 657 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 DHCR24Q15392 516 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 DPYSL2Q16555 572 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 KLHL38Q2WGJ6 581 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 XKR4Q5GH76 650 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 FSCBQ5H9T9 825 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 PTCRAQ6ISU1 281 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 VITQ6UXI7 678 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 PRR23BQ6ZRT6 265 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 CEP68Q76N32 757 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 SZRD1Q7Z422 152 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 LINC00523Q86TU6 105 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 PQLC3Q8N755 202 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 ARMC2Q8NEN0 867 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 CMASQ8NFW8 434 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 USP13Q92995 863 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 ARL8AQ96BM9 186 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 ULK4Q96C45 1275 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 PHF21BQ96EK2 531 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 TBATAQ96M53 351 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 CLPBQ9H078 707 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 C12orf65Q9H3J6 166 aaKnown RBP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 UGT1A7Q9HAW7 530 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 UGT1A10Q9HAW8 530 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 UGT1A8Q9HAW9 530 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 NOD2Q9HC29 1040 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 SPHK2Q9NRA0 654 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 GGA2Q9UJY4 613 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 TDRKHQ9Y2W6 561 aaKnown RBP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 KCTD3Q9Y597 815 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 ZNF646O15015 1829 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 PLXNB2O15031 1838 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 IQCF5A8MTL0 148 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 CFAP99D6REC4 459 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 H3BNC9 293 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 NDUFS2O75306 463 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 GABBR2O75899 941 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 PSMC3P17980 439 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 KRT4P19013 534 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 TSPAN8P19075 237 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 HOXC8P31273 242 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 SLC6A4P31645 630 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 GPR1P46091 355 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 AARSP49588 968 aaKnown RBP eCLIP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 CCNHP51946 323 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 PARP6Q2NL67 630 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 FAM78AQ5JUQ0 283 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 KLC3Q6P597 504 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 TTC23LQ6PF05 361 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 CNSTQ6PJW8 725 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 UNC5AQ6ZN44 842 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 TPRG1Q6ZUI0 275 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 C11orf96Q7Z7L8 435 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 TRIM74Q86UV6 250 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 KCNMB4Q86W47 210 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 BCAS4Q8TDM0 211 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 TEKT4Q8WW24 435 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 OR8D1Q8WZ84 308 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 PLD4Q96BZ4 506 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 SERPINB12Q96P63 405 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 PAFAH2Q99487 392 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 RPP25Q9BUL9 199 aaKnown RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 ACAT2Q9BWD1 397 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 CAB39LQ9H9S4 337 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 ZNHIT2Q9UHR6 403 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 CD207Q9UJ71 328 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 NCKAP1Q9Y2A7 1128 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 COQ6Q9Y2Z9 468 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 PRKAB1Q9Y478 270 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 TTC34A8MYJ7 566 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 SUPT3HB4E1H0 165 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 TMEM189-UBE2V1I3L0A0 370 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 SMAD6O43541 496 aaKnown RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 SUPT3HO75486 399 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 GPC4O75487 556 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 TMEM63AO94886 807 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms