RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 SH3RF2Q8TEC5 729 aa12.83□□□□□ -0.35
USP3-213ENST00000559711 MCMBPQ9BTE3 642 aa12.83□□□□□ -0.35
USP3-213ENST00000559711 CINPQ9BW66 212 aaPredicted RBP12.83□□□□□ -0.35
USP3-213ENST00000559711 NSMCE4AQ9NXX6 385 aa12.83□□□□□ -0.35
USP3-213ENST00000559711 ZMYM5Q9UJ78 669 aa12.83□□□□□ -0.35
USP3-213ENST00000559711 CHD7Q9P2D1 2997 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 INSIG1O15503 277 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 GJB3O75712 270 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 PAPSS2O95340 614 aaPredicted RBP12.83□□□□□ -0.36
USP3-213ENST00000559711 ITGA2BP08514 1039 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 HLA-DPA1P20036 260 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 AVPR1AP37288 418 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 NUMBP49757 651 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 CSE1LP55060 971 aaKnown RBP12.83□□□□□ -0.36
USP3-213ENST00000559711 NSUN2Q08J23 767 aaKnown RBP eCLIP12.83□□□□□ -0.36
USP3-213ENST00000559711 CDH18Q13634 790 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 SLC5A9Q2M3M2 681 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 SIRPB2Q5JXA9 342 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 ESRP1Q6NXG1 681 aaKnown RBP12.83□□□□□ -0.36
USP3-213ENST00000559711 RGS9BPQ6ZS82 235 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 TAX1BP1Q86VP1 789 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 CNTN4Q8IWV2 1026 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 LRRC34Q8IZ02 419 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 DCAF4L2Q8NA75 395 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 WFDC5Q8TCV5 224 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 DDI1Q8WTU0 396 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 ZNF707Q96C28 371 aaPredicted RBP12.83□□□□□ -0.36
USP3-213ENST00000559711 TRIB3Q96RU7 358 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 AGAP2Q99490 1192 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 NOD2Q9HC29 1040 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 TXNDC16Q9P2K2 825 aa12.83□□□□□ -0.36
USP3-213ENST00000559711 CHD5Q8TDI0 1954 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 MROH6A6NGR9 719 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 COPEO14579 308 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 PER2O15055 1255 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 SNAP91O60641 907 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 SIN3BO75182 1162 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 PAPLNO95428 1278 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 ALDOAP04075 364 aaKnown RBP12.82□□□□□ -0.36
USP3-213ENST00000559711 FGF1P05230 155 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 DHRS4L1P0CG22 281 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 ARNTP27540 789 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 FOXN2P32314 431 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 SPRP35270 261 aaPredicted RBP12.82□□□□□ -0.36
USP3-213ENST00000559711 CSKP41240 450 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 ETV4P43268 484 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 MAGEA10P43363 369 aaPredicted RBP12.82□□□□□ -0.36
USP3-213ENST00000559711 RGRP47804 291 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 CNGA3Q16281 694 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 HHATQ5VTY9 493 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 KIAA0930Q6ICG6 404 aaPredicted RBP12.82□□□□□ -0.36
USP3-213ENST00000559711 FOXR1Q6PIV2 292 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 LVRNQ6Q4G3 990 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 STRA8Q7Z7C7 330 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 CPLX4Q7Z7G2 160 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 MFN1Q8IWA4 741 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 FIBINQ8TAL6 211 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 USP13Q92995 863 aaPredicted RBP12.82□□□□□ -0.36
USP3-213ENST00000559711 ISL2Q96A47 359 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 IFT43Q96FT9 208 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 NSMCE3Q96MG7 304 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 NUDCD1Q96RS6 583 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 RBBP8Q99708 897 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 SMG9Q9H0W8 520 aaKnown RBP12.82□□□□□ -0.36
USP3-213ENST00000559711 VPS11Q9H270 941 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 IARS2Q9NSE4 1012 aaKnown RBP12.82□□□□□ -0.36
USP3-213ENST00000559711 TDP1Q9NUW8 608 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 VPS28Q9UK41 221 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 GRID1Q9ULK0 1009 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 CCL26Q9Y258 94 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 YBX2Q9Y2T7 364 aaKnown RBP12.82□□□□□ -0.36
USP3-213ENST00000559711 ARIH1Q9Y4X5 557 aaPredicted RBP12.82□□□□□ -0.36
USP3-213ENST00000559711 HCFC2Q9Y5Z7 792 aa12.82□□□□□ -0.36
USP3-213ENST00000559711 CXorf51AA0A1B0GTR3 108 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 TCP11X1B4DZS4 312 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 ZNF197O14709 1029 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 TMCC1O94876 653 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 NDST3O95803 873 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 VIMP08670 466 aaKnown RBP12.81□□□□□ -0.36
USP3-213ENST00000559711 ALADP13716 330 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 TCF3P15923 654 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 PAMP19021 973 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 TAC1P20366 129 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 CRHR1P34998 444 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 MAGEA12P43365 314 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 CCT5P48643 541 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 LIMK2P53671 638 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 PDK4Q16654 411 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 QPCTQ16769 361 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 TSTD2Q5T7W7 516 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 NLRP9Q7RTR0 991 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 ACDQ96AP0 544 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 SRPK1Q96SB4 655 aaKnown RBP12.81□□□□□ -0.36
USP3-213ENST00000559711 PAIP2Q9BPZ3 127 aaKnown RBP12.81□□□□□ -0.36
USP3-213ENST00000559711 C2orf49Q9BVC5 232 aaPredicted RBP12.81□□□□□ -0.36
USP3-213ENST00000559711 FAM107BQ9H098 131 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 KIAA1522Q9P206 1035 aaPredicted RBP12.81□□□□□ -0.36
USP3-213ENST00000559711 SLC17A7Q9P2U7 560 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 SLC2A6Q9UGQ3 507 aa12.81□□□□□ -0.36
USP3-213ENST00000559711 VPS51Q9UID3 782 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms