RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 RALGDSQ12967 914 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 CTBP1Q13363 440 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 TMED1Q13445 227 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 HFE2Q6ZVN8 426 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 TXNDC5Q8NBS9 432 aaKnown RBP17.73■□□□□ 0.43
SYNE3-202ENST00000553340 HM13Q8TCT9 377 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 SLCO4A1Q96BD0 722 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 SGF29Q96ES7 293 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 BIRC8Q96P09 236 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 UHRF1Q96T88 793 aaPredicted RBP17.73■□□□□ 0.43
SYNE3-202ENST00000553340 CIB1Q99828 191 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 CCDC167Q9P0B6 97 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 GJD2Q9UKL4 321 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 GINS2Q9Y248 185 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 RALGAPA2Q2PPJ7 1873 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 UBDO15205 165 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 ZNF286BP0CG31 522 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 HNRNPLP14866 589 aaKnown RBP eCLIP17.73■□□□□ 0.437e-8■■■■□ 21.8
SYNE3-202ENST00000553340 ATP5F1P24539 256 aaPredicted RBP17.73■□□□□ 0.43
SYNE3-202ENST00000553340 SCNN1BP51168 640 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 DNAJB13P59910 316 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 MPP1Q00013 466 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 AGKQ53H12 422 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 PCID2Q5JVF3 399 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 PKN3Q6P5Z2 889 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 CNSTQ6PJW8 725 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 POTEHQ6S545 545 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 DENND6AQ8IWF6 608 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 CNTN4Q8IWV2 1026 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 KCTD13Q8WZ19 329 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 PPWD1Q96BP3 646 aaKnown RBP17.73■□□□□ 0.43
SYNE3-202ENST00000553340 UNKQ9C0B0 810 aaKnown RBP17.73■□□□□ 0.43
SYNE3-202ENST00000553340 NOL11Q9H8H0 719 aaKnown RBP17.73■□□□□ 0.43
SYNE3-202ENST00000553340 ANLNQ9NQW6 1124 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.73■□□□□ 0.43
SYNE3-202ENST00000553340 FBP2O00757 339 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 BEST1O76090 585 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 STAMBPO95630 424 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 YBX3P16989 372 aaKnown RBP eCLIP17.72■□□□□ 0.43
SYNE3-202ENST00000553340 PNPLA4P41247 253 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 ALKAL1Q6UXT8 129 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 CYP2R1Q6VVX0 501 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 ZBTB49Q6ZSB9 765 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 ARMCX2Q7L311 632 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 ABTB1Q969K4 478 aaPredicted RBP17.72■□□□□ 0.43
SYNE3-202ENST00000553340 FTHL17Q9BXU8 183 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 ANKRD60Q9BZ19 345 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 CLK4Q9HAZ1 481 aaKnown RBP17.72■□□□□ 0.43
SYNE3-202ENST00000553340 SLC8A2Q9UPR5 921 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 CLDN5O00501 218 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 IRF6O14896 467 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 HTRA2O43464 458 aaPredicted RBP17.72■□□□□ 0.43
SYNE3-202ENST00000553340 HUS1O60921 280 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 GPC4O75487 556 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 RECQL4O94761 1208 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 TAF6P49848 677 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 TKTL1P51854 596 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 PPIL2Q13356 520 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 ARL13BQ3SXY8 428 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 SAMD4BQ5PRF9 694 aaKnown RBP17.72■□□□□ 0.43
SYNE3-202ENST00000553340 CATSPER4Q7RTX7 472 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 HMGCLL1Q8TB92 370 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 GRIN3AQ8TCU5 1115 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 TRPM4Q8TD43 1214 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 PPP1R14BQ96C90 147 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 WDR6Q9NNW5 1121 aaKnown RBP17.72■□□□□ 0.43
SYNE3-202ENST00000553340 TXNRD2Q9NNW7 524 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 CD300AQ9UGN4 299 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 FBXW11Q9UKB1 542 aa17.72■□□□□ 0.43
SYNE3-202ENST00000553340 A0A087X1B8 175 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 FAM155AB1AL88 458 aaPredicted RBP17.71■□□□□ 0.43
SYNE3-202ENST00000553340 I6L893 689 aaPredicted RBP17.71■□□□□ 0.43
SYNE3-202ENST00000553340 SNRPB2P08579 225 aaKnown RBP17.71■□□□□ 0.43
SYNE3-202ENST00000553340 PSMD5Q16401 504 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 MFSD6LQ8IWD5 586 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.71■□□□□ 0.43
SYNE3-202ENST00000553340 ELMO2Q96JJ3 720 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 PHF12Q96QT6 1004 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 SLC25A23Q9BV35 468 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 OSBPL2Q9H1P3 480 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 LIN28AQ9H9Z2 209 aaKnown RBP17.71■□□□□ 0.43
SYNE3-202ENST00000553340 MEAF6Q9HAF1 191 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 EML4Q9HC35 981 aaKnown RBP17.71■□□□□ 0.43
SYNE3-202ENST00000553340 CNOT6Q9ULM6 557 aaKnown RBP17.71■□□□□ 0.43
SYNE3-202ENST00000553340 SHROOM3Q8TF72 1996 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 BMP10O95393 424 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 HSPA8P11142 646 aaKnown RBP17.71■□□□□ 0.43
SYNE3-202ENST00000553340 IMPDH2P12268 514 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 NDST2P52849 883 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 SLC12A2P55011 1212 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 Q3C1V9 767 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 HMBOX1Q6NT76 420 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 HEXDCQ8WVB3 486 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 UPF3AQ9H1J1 476 aaKnown RBP17.71■□□□□ 0.43
SYNE3-202ENST00000553340 NXF3Q9H4D5 531 aaKnown RBP17.71■□□□□ 0.43
SYNE3-202ENST00000553340 RRN3Q9NYV6 651 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 CROTQ9UKG9 612 aa17.71■□□□□ 0.43
SYNE3-202ENST00000553340 FAF1Q9UNN5 650 aaPredicted RBP17.71■□□□□ 0.43
SYNE3-202ENST00000553340 AAR2Q9Y312 384 aaKnown RBP17.71■□□□□ 0.43
SYNE3-202ENST00000553340 MRASO14807 208 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms