RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 MAP10Q9P2G4 905 aa8.83□□□□□ -1
YBX3-208ENST00000540447 PI4KBQ9UBF8 816 aa8.83□□□□□ -1
YBX3-208ENST00000540447 LEF1Q9UJU2 399 aaPredicted RBP8.83□□□□□ -1
YBX3-208ENST00000540447 AGO2Q9UKV8 859 aaKnown RBP8.83□□□□□ -1
YBX3-208ENST00000540447 PADI2Q9Y2J8 665 aa8.83□□□□□ -1
YBX3-208ENST00000540447 RAB19A4D1S5 217 aa8.83□□□□□ -1
YBX3-208ENST00000540447 H0YIN7 160 aa8.83□□□□□ -1
YBX3-208ENST00000540447 HMGB3O15347 200 aaKnown RBP8.83□□□□□ -1
YBX3-208ENST00000540447 ADORA2BP29275 332 aa8.83□□□□□ -1
YBX3-208ENST00000540447 DEFA6Q01524 100 aa8.83□□□□□ -1
YBX3-208ENST00000540447 GRM4Q14833 912 aa8.83□□□□□ -1
YBX3-208ENST00000540447 BORAQ6PGQ7 559 aa8.83□□□□□ -1
YBX3-208ENST00000540447 ZNF767PQ75MW2 155 aa8.83□□□□□ -1
YBX3-208ENST00000540447 TCTEX1D2Q8WW35 142 aa8.83□□□□□ -1
YBX3-208ENST00000540447 TRIM43Q96BQ3 446 aaPredicted RBP8.83□□□□□ -1
YBX3-208ENST00000540447 CCDC120Q96HB5 630 aa8.83□□□□□ -1
YBX3-208ENST00000540447 CCDC17Q96LX7 622 aa8.83□□□□□ -1
YBX3-208ENST00000540447 RASSF1Q9NS23 344 aa8.83□□□□□ -1
YBX3-208ENST00000540447 NESP48681 1621 aa8.83□□□□□ -1
YBX3-208ENST00000540447 OR2AT4A6NND4 320 aa8.83□□□□□ -1
YBX3-208ENST00000540447 MSH4O15457 936 aa8.83□□□□□ -1
YBX3-208ENST00000540447 LYPLA1O75608 230 aaPredicted RBP8.83□□□□□ -1
YBX3-208ENST00000540447 EPHA3P29320 983 aa8.83□□□□□ -1
YBX3-208ENST00000540447 RORAP35398 523 aa8.83□□□□□ -1
YBX3-208ENST00000540447 AP3S2P59780 193 aa8.83□□□□□ -1
YBX3-208ENST00000540447 RALGPS1Q5JS13 557 aa8.83□□□□□ -1
YBX3-208ENST00000540447 CDKL4Q5MAI5 379 aa8.83□□□□□ -1
YBX3-208ENST00000540447 PTRHD1Q6GMV3 140 aaKnown RBP8.83□□□□□ -1
YBX3-208ENST00000540447 TREML1Q86YW5 311 aa8.83□□□□□ -1
YBX3-208ENST00000540447 COQ8AQ8NI60 647 aa8.83□□□□□ -1
YBX3-208ENST00000540447 CNPPD1Q9BV87 410 aa8.83□□□□□ -1
YBX3-208ENST00000540447 YTHDF1Q9BYJ9 559 aaKnown RBP8.83□□□□□ -1
YBX3-208ENST00000540447 PRMT8Q9NR22 394 aaPredicted RBP8.83□□□□□ -1
YBX3-208ENST00000540447 FAM217BQ9NTX9 383 aaPredicted RBP8.83□□□□□ -1
YBX3-208ENST00000540447 ARMC1Q9NVT9 282 aa8.83□□□□□ -1
YBX3-208ENST00000540447 RPS6KA6Q9UK32 745 aa8.83□□□□□ -1
YBX3-208ENST00000540447 SYNMO15061 1565 aa8.83□□□□□ -1
YBX3-208ENST00000540447 FAM149AA5PLN7 773 aa8.83□□□□□ -1
YBX3-208ENST00000540447 SERPINA3P01011 423 aa8.83□□□□□ -1
YBX3-208ENST00000540447 RB1P06400 928 aa8.83□□□□□ -1
YBX3-208ENST00000540447 MTHFRP42898 656 aa8.83□□□□□ -1
YBX3-208ENST00000540447 ZNF81P51508 661 aa8.83□□□□□ -1
YBX3-208ENST00000540447 ERVK-8P63133 956 aa8.83□□□□□ -1
YBX3-208ENST00000540447 VMACQ2NL98 169 aa8.83□□□□□ -1
YBX3-208ENST00000540447 ANKRD13BQ86YJ7 626 aa8.83□□□□□ -1
YBX3-208ENST00000540447 APOL2Q9BQE5 337 aa8.83□□□□□ -1
YBX3-208ENST00000540447 SENP6Q9GZR1 1112 aaPredicted RBP8.83□□□□□ -1
YBX3-208ENST00000540447 GREM2Q9H772 168 aa8.83□□□□□ -1
YBX3-208ENST00000540447 METTL8Q9H825 291 aaKnown RBP8.83□□□□□ -1
YBX3-208ENST00000540447 TMEM8AQ9HCN3 771 aa8.83□□□□□ -1
YBX3-208ENST00000540447 XPNPEP3Q9NQH7 507 aa8.83□□□□□ -1
YBX3-208ENST00000540447 PNPOQ9NVS9 261 aa8.83□□□□□ -1
YBX3-208ENST00000540447 SAMHD1Q9Y3Z3 626 aaKnown RBP8.83□□□□□ -1
YBX3-208ENST00000540447 GRAP2O75791 330 aa8.83□□□□□ -1
YBX3-208ENST00000540447 CYP3A4P08684 503 aa8.83□□□□□ -1
YBX3-208ENST00000540447 TNNI3P19429 210 aa8.83□□□□□ -1
YBX3-208ENST00000540447 GLDCP23378 1020 aa8.83□□□□□ -1
YBX3-208ENST00000540447 RRM1P23921 792 aa8.83□□□□□ -1
YBX3-208ENST00000540447 STOMP27105 288 aa8.83□□□□□ -1
YBX3-208ENST00000540447 ALDH3A2P51648 485 aa8.83□□□□□ -1
YBX3-208ENST00000540447 LRP8Q14114 963 aa8.83□□□□□ -1
YBX3-208ENST00000540447 RHEBQ15382 184 aa8.83□□□□□ -1
YBX3-208ENST00000540447 SLC1A5Q15758 541 aa8.83□□□□□ -1
YBX3-208ENST00000540447 SNRNP35Q16560 246 aaKnown RBP8.83□□□□□ -1
YBX3-208ENST00000540447 DUOXA2Q1HG44 320 aa8.83□□□□□ -1
YBX3-208ENST00000540447 GPAT2Q6NUI2 795 aa8.83□□□□□ -1
YBX3-208ENST00000540447 B3GALNT2Q8NCR0 500 aa8.83□□□□□ -1
YBX3-208ENST00000540447 ASIC4Q96FT7 647 aa8.83□□□□□ -1
YBX3-208ENST00000540447 ANKHQ9HCJ1 492 aa8.83□□□□□ -1
YBX3-208ENST00000540447 CD320Q9NPF0 282 aa8.83□□□□□ -1
YBX3-208ENST00000540447 RAP2CQ9Y3L5 183 aa8.83□□□□□ -1
YBX3-208ENST00000540447 WDR27A2RRH5 827 aa8.82□□□□□ -1
YBX3-208ENST00000540447 TNFRSF10AO00220 468 aa8.82□□□□□ -1
YBX3-208ENST00000540447 RFPL2O75678 378 aa8.82□□□□□ -1
YBX3-208ENST00000540447 MAP3K6O95382 1288 aa8.82□□□□□ -1
YBX3-208ENST00000540447 ZNF182P17025 639 aaPredicted RBP8.82□□□□□ -1
YBX3-208ENST00000540447 OMPP47874 163 aa8.82□□□□□ -1
YBX3-208ENST00000540447 ANXA11P50995 505 aaKnown RBP8.82□□□□□ -1
YBX3-208ENST00000540447 JAK3P52333 1124 aa8.82□□□□□ -1
YBX3-208ENST00000540447 MERTKQ12866 999 aa8.82□□□□□ -1
YBX3-208ENST00000540447 PROSER3Q2NL68 480 aa8.82□□□□□ -1
YBX3-208ENST00000540447 BOLA3Q53S33 107 aa8.82□□□□□ -1
YBX3-208ENST00000540447 SFT2D3Q587I9 215 aa8.82□□□□□ -1
YBX3-208ENST00000540447 SH3RF1Q7Z6J0 888 aa8.82□□□□□ -1
YBX3-208ENST00000540447 GALNT5Q7Z7M9 940 aa8.82□□□□□ -1
YBX3-208ENST00000540447 AP1S3Q96PC3 154 aa8.82□□□□□ -1
YBX3-208ENST00000540447 ZNF347Q96SE7 839 aa8.82□□□□□ -1
YBX3-208ENST00000540447 FEM1AQ9BSK4 669 aa8.82□□□□□ -1
YBX3-208ENST00000540447 MAT2BQ9NZL9 334 aa8.82□□□□□ -1
YBX3-208ENST00000540447 GLS2Q9UI32 602 aa8.82□□□□□ -1
YBX3-208ENST00000540447 DNPEPQ9ULA0 475 aa8.82□□□□□ -1
YBX3-208ENST00000540447 VPS9D1Q9Y2B5 631 aa8.82□□□□□ -1
YBX3-208ENST00000540447 NLRP1Q9C000 1473 aa8.82□□□□□ -1
YBX3-208ENST00000540447 CPSF1Q10570 1443 aaKnown RBP8.82□□□□□ -1
YBX3-208ENST00000540447 PLEKHG3A1L390 1219 aa8.82□□□□□ -1
YBX3-208ENST00000540447 TCEA3O75764 348 aa8.82□□□□□ -1
YBX3-208ENST00000540447 CRABP2P29373 138 aa8.82□□□□□ -1
YBX3-208ENST00000540447 PRDX6P30041 224 aa8.82□□□□□ -1
YBX3-208ENST00000540447 RGS7P49802 495 aa8.82□□□□□ -1
YBX3-208ENST00000540447 RORCP51449 518 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms