RNA–Protein interactions for RNA: ENST00000504430.5

NIPBL-204, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 3,455 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-204ENST00000504430 TSPAN4O14817 238 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 WDR46O15213 610 aaKnown RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 DHHO43323 396 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 LIASO43766 372 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 CCNDBP1O95273 360 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 FAHP16930 419 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 PTPN4P29074 926 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 HNRNPDQ14103 355 aaKnown RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 GRIK4Q16099 956 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 SGCBQ16585 318 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 LRIT3Q3SXY7 679 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 TRIM60Q495X7 471 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 CCDC152Q4G0S7 254 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 SMUG1Q53HV7 270 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 KLC3Q6P597 504 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 TMC5Q6UXY8 1006 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 WDR88Q6ZMY6 472 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 USP37Q86T82 979 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 REXO1L1PQ8IX06 675 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 SRRM1Q8IYB3 904 aaKnown RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 BCL6BQ8N143 479 aaPredicted RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 C11orf44Q8N8P7 122 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 EIF1ADQ8N9N8 165 aaKnown RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 CCNYQ8ND76 341 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 RBM15BQ8NDT2 890 aaKnown RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 OR8K5Q8NH50 307 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 LRRC8CQ8TDW0 803 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 DDI1Q8WTU0 396 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 WASF1Q92558 559 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 SDCCAG3Q96C92 435 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 ALG14Q96F25 216 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 CNOT6LQ96LI5 555 aaKnown RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 GDAP2Q9NXN4 497 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 GALNT8Q9NY28 637 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 ANGPTL2Q9UKU9 493 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 GABRQQ9UN88 632 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 OR6C74A6NCV1 312 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 SLC38A8A6NNN8 435 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 E9PLN8 166 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 CELF2O95319 508 aaKnown RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 GBAP04062 536 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 GNAI3P08754 354 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 PIM1P11309 404 aaPredicted RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 FUT4P22083 530 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 DNASE1P24855 282 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 GNAI1P63096 354 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 SP2Q02086 613 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 SQLEQ14534 574 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 USP10Q14694 798 aaKnown RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 TRIM71Q2Q1W2 868 aaKnown RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 ASTE1Q2TB18 679 aaPredicted RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 GRAMD4Q6IC98 578 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 FAM173BQ6P4H8 233 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 FOXR1Q6PIV2 292 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 LRRC49Q8IUZ0 686 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 KRT222Q8N1A0 295 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 GBP7Q8N8V2 638 aaPredicted RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 LPCAT1Q8NF37 534 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 SELENOMQ8WWX9 145 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 DTD2Q96FN9 168 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 ZNF558Q96NG5 402 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 VKORC1Q9BQB6 163 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 GORASP1Q9BQQ3 440 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 TRIM2Q9C040 744 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 C11orf54Q9H0W9 315 aaPredicted RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 SETD4Q9NVD3 440 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 LMCD1Q9NZU5 365 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 KCNK6Q9Y257 313 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 TCAF2A6NFQ2 919 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 FAM170BA6NMN3 283 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 IGF2BP3O00425 579 aaKnown RBP eCLIP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 SLC16A3O15427 465 aaKnown RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 ARSEP51690 589 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 ASIC1P78348 528 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 NHLRC1Q6VVB1 395 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 FMR1NBQ8N0W7 255 aaPredicted RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 CAMK1GQ96NX5 476 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 GAL3ST4Q96RP7 486 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 JPH2Q9BR39 696 aaPredicted RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 SMOC2Q9H3U7 446 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 ATP13A2Q9NQ11 1180 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 MBNL1Q9NR56 388 aaKnown RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 KLHL14Q9P2G3 628 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 DNMT3BQ9UBC3 853 aaKnown RBP5.33□□□□□ -1.56
NIPBL-204ENST00000504430 HCSTQ9UBK5 93 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 CDYLQ9Y232 598 aa5.33□□□□□ -1.56
NIPBL-204ENST00000504430 MEX3AA1L020 520 aaKnown RBP5.32□□□□□ -1.56
NIPBL-204ENST00000504430 SH2D7A6NKC9 451 aaPredicted RBP5.32□□□□□ -1.56
NIPBL-204ENST00000504430 OR2AG2A6NM03 316 aa5.32□□□□□ -1.56
NIPBL-204ENST00000504430 SHISA8B8ZZ34 492 aa5.32□□□□□ -1.56
NIPBL-204ENST00000504430 CACNG3O60359 315 aa5.32□□□□□ -1.56
NIPBL-204ENST00000504430 EIF4EBP3O60516 100 aaPredicted RBP5.32□□□□□ -1.56
NIPBL-204ENST00000504430 GLP2RO95838 553 aa5.32□□□□□ -1.56
NIPBL-204ENST00000504430 GLAP06280 429 aa5.32□□□□□ -1.56
NIPBL-204ENST00000504430 BMP3P12645 472 aa5.32□□□□□ -1.56
NIPBL-204ENST00000504430 TRIM21P19474 475 aaKnown RBP5.32□□□□□ -1.56
NIPBL-204ENST00000504430 PXNP49023 591 aaPredicted RBP5.32□□□□□ -1.56
NIPBL-204ENST00000504430 SLFN5Q08AF3 891 aa5.32□□□□□ -1.56
NIPBL-204ENST00000504430 MZT1Q08AG7 82 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms