RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	BBS5	Q8N3I7	341 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	OXR1	Q8N573	874 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	CXorf40A	Q8TE69	158 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	KLHDC7B	Q96G42	594 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	LRIG1	Q96JA1	1093 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	CCDC42	Q96M95	316 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	SCNM1	Q9BWG6	230 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	CALN1	Q9BXU9	219 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	HDAC8	Q9BY41	377 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	FZD3	Q9NPG1	666 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	ARHGAP20	Q9P2F6	1191 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	IPO11	Q9UI26	975 aa	Known RBP	11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	NEU3	Q9UQ49	428 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	APOBEC2	Q9Y235	224 aa	Known RBP	11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	LAMA1	P25391	3075 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	CXorf51A	A0A1B0GTR3	108 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	SRRM3	A6NNA2	597 aa	Predicted RBP	11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	UPK3BL1	B0FP48	263 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	UPK3BL2	E5RIL1	263 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	TLR4	O00206	839 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	YKT6	O15498	198 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	ZNF883	P0CG24	379 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	C7	P10643	843 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	HNRNPA2B1	P22626	353 aa	Known RBP	11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	CTSK	P43235	329 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	GRK6	P43250	576 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	ADK	P55263	362 aa	Known RBP	11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	CDH6	P55285	790 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	ZNF235	Q14590	738 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	GRM3	Q14832	879 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	INO80D	Q53TQ3	878 aa	Predicted RBP	11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	LRRC73	Q5JTD7	316 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	PRAMEF14	Q5SWL7	426 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	KIAA1161	Q6NSJ0	714 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	VSTM4	Q8IW00	320 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	LZTR1	Q8N653	840 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	MFSD2A	Q8NA29	543 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	C1orf216	Q8TAB5	229 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	RAB7B	Q96AH8	199 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	ELF4	Q99607	663 aa	Predicted RBP	11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	CDC6	Q99741	560 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	SLC39A8	Q9C0K1	460 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	KLC2	Q9H0B6	622 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	EBF2	Q9HAK2	575 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	ABHD10	Q9NUJ1	306 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	CWC15	Q9P013	229 aa	Known RBP	11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	FTSJ1	Q9UET6	329 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	CA5B	Q9Y2D0	317 aa		11.69	□□□□□ -0.54
CPNE1-222	ENST00000473373	ZZEF1	O43149	2961 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	BAHCC1	Q9P281	2608 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373		A6NNZ2	444 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	AKR1B15	C9JRZ8	316 aa	Predicted RBP	11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373		J3KR12	359 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	LAT	O43561	262 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	ZNF821	O75541	412 aa	Predicted RBP	11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	GJB3	O75712	270 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	PIGN	O95427	931 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	WNT1	P04628	370 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	CYP1A2	P05177	515 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	THEGL	P0DJG4	465 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	AMPD1	P23109	780 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	TAS2R38	P59533	333 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	BNC1	Q01954	994 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	OVGP1	Q12889	678 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	SLC18A3	Q16572	532 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	SEL1L3	Q68CR1	1132 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	PIP4P1	Q86T03	277 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	GATAD2A	Q86YP4	633 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	PLPP6	Q8IY26	295 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	ATPAF2	Q8N5M1	289 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	KCTD6	Q8NC69	237 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	C1QTNF7	Q9BXJ2	289 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	NOL6	Q9H6R4	1146 aa	Known RBP	11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	UVRAG	Q9P2Y5	699 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	LCMT1	Q9UIC8	334 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	PCDHGB2	Q9Y5G2	931 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373	PTPRB	P23467	1997 aa		11.68	□□□□□ -0.54
CPNE1-222	ENST00000473373		A0A1B0GTQ1	180 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	SSU72P8	A0A1W2PR75	194 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	FPGT	O14772	594 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	WNT9A	O14904	365 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	TSPAN6	O43657	245 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	HYAL3	O43820	417 aa	Predicted RBP	11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	PRAMEF11	O60813	436 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	MFAP3L	O75121	409 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	TRIM16	O95361	564 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	CD160	O95971	181 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	PAK4	O96013	591 aa	Predicted RBP	11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	FTH1P19	P0C7X4	201 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	RARA	P10276	462 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	TNNT1	P13805	278 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	IL1R2	P27930	398 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	SERPINA4	P29622	427 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	RENBP	P51606	427 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	BCL2L1	Q07817	233 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	ITK	Q08881	620 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	ELP6	Q0PNE2	266 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	MESD	Q14696	234 aa		11.67	□□□□□ -0.54
CPNE1-222	ENST00000473373	DPYSL2	Q16555	572 aa		11.67	□□□□□ -0.54

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