RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 HMBOX1Q6NT76 420 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 ARMCX6Q7L4S7 300 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 MIER3Q7Z3K6 550 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 LINC00523Q86TU6 105 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 PLD6Q8N2A8 252 aaKnown RBP5.2□□□□□ -1.58
RIF1-203ENST00000428287 STYXQ8WUJ0 223 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 LPGAT1Q92604 370 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 KHSRPQ92945 711 aaKnown RBP eCLIP5.2□□□□□ -1.582e-7■■■■□ 19.9
RIF1-203ENST00000428287 ELMO2Q96JJ3 720 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 PCDHAC1Q9H158 963 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 LRRC40Q9H9A6 602 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 KCNH7Q9NS40 1196 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 MAP3K20Q9NYL2 800 aaKnown RBP5.2□□□□□ -1.58
RIF1-203ENST00000428287 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.2□□□□□ -1.581e-6■□□□□ 10.7
RIF1-203ENST00000428287 PKD2L1Q9P0L9 805 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 DHRS12A0PJE2 317 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 C2CD4BA6NLJ0 364 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 NRP2O60462 931 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 DGAT1O75907 488 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 VDRP11473 427 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 ZNF143P52747 638 aaPredicted RBP5.2□□□□□ -1.58
RIF1-203ENST00000428287 TRPC3Q13507 836 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 SEPT6Q14141 434 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 SKIV2LQ15477 1246 aaKnown RBP5.2□□□□□ -1.58
RIF1-203ENST00000428287 DPYSL2Q16555 572 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 KIZQ2M2Z5 673 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 SLC9B1Q4ZJI4 515 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 CCNYL2Q5T2Q4 361 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 GPR107Q5VW38 600 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 ZPBP2Q6X784 338 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 SLC7A5P1Q8MH63 180 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 CERS2Q96G23 380 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 MYRFLQ96LU7 910 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 GLT1D1Q96MS3 346 aa5.2□□□□□ -1.58
RIF1-203ENST00000428287 SMPD3Q9NY59 655 aaPredicted RBP5.2□□□□□ -1.58
RIF1-203ENST00000428287 FAM172BPA6NC97 362 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 STX16-NPEPL1H3BU86 382 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 UPK1AO00322 258 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 SEC14L5O43304 696 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 ZMPSTE24O75844 475 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 BBOX1O75936 387 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 HTR1AP08908 422 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 UMPSP11172 480 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 YWHABP31946 246 aaKnown RBP5.19□□□□□ -1.58
RIF1-203ENST00000428287 PKNOX1P55347 436 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 P2RX3P56373 397 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 CXCR4P61073 352 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 DMP1Q13316 513 aaPredicted RBP5.19□□□□□ -1.58
RIF1-203ENST00000428287 GRAPQ13588 217 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 CRY1Q16526 586 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 UGT3A2Q3SY77 523 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 FSTL4Q6MZW2 842 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 LARP4Q71RC2 724 aaKnown RBP eCLIP5.19□□□□□ -1.585e-9■■■■□ 24.4
RIF1-203ENST00000428287 ERO1BQ86YB8 467 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 PSTKQ8IV42 348 aaKnown RBP5.19□□□□□ -1.58
RIF1-203ENST00000428287 TNS4Q8IZW8 715 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 LGI2Q8N0V4 545 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 GRAPLQ8TC17 118 aaPredicted RBP5.19□□□□□ -1.58
RIF1-203ENST00000428287 DYNC2LI1Q8TCX1 351 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 GPRASP2Q96D09 838 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 NDEL1Q9GZM8 345 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 NOL11Q9H8H0 719 aaKnown RBP5.19□□□□□ -1.58
RIF1-203ENST00000428287 TBC1D13Q9NVG8 400 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 BCS1LQ9Y276 419 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 SLC27A5Q9Y2P5 690 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 ZNF541Q9H0D2 1346 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 SOCS2O14508 198 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 SDHDO14521 159 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 TIMM44O43615 452 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 KLHL41O60662 606 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 CST3P01034 146 aaPredicted RBP5.19□□□□□ -1.58
RIF1-203ENST00000428287 HSPA8P11142 646 aaKnown RBP5.19□□□□□ -1.58
RIF1-203ENST00000428287 TYK2P29597 1187 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 SNAP25P60880 206 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 RPL10AP62906 217 aaKnown RBP5.19□□□□□ -1.58
RIF1-203ENST00000428287 TBC1D21Q8IYX1 336 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 CLYBLQ8N0X4 340 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 SNX31Q8N9S9 440 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 SREK1Q8WXA9 508 aaKnown RBP5.19□□□□□ -1.58
RIF1-203ENST00000428287 TFAP2BQ92481 460 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 ZNF566Q969W8 418 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 NACC2Q96BF6 587 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 ROPN1LQ96C74 230 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 ZNF577Q9BSK1 485 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 BTBD2Q9BX70 525 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 SEZ6LQ9BYH1 1024 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 UPF3AQ9H1J1 476 aaKnown RBP5.19□□□□□ -1.58
RIF1-203ENST00000428287 SMOC2Q9H3U7 446 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 FBXO5Q9UKT4 447 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 PCDHA11Q9Y5I1 949 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 SUPT7LO94864 414 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 ALX3O95076 343 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 LDHAP00338 332 aaKnown RBP5.19□□□□□ -1.58
RIF1-203ENST00000428287 ENO3P13929 434 aaPredicted RBP5.19□□□□□ -1.58
RIF1-203ENST00000428287 KPNA1P52294 538 aaPredicted RBP5.19□□□□□ -1.58
RIF1-203ENST00000428287 PPP2R2BQ00005 443 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 NFIAQ12857 509 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 TRIM32Q13049 653 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 RCAN2Q14206 197 aa5.19□□□□□ -1.58
RIF1-203ENST00000428287 GEN1Q17RS7 908 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms