RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 PCDHGC3Q9UN70 934 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 ITM2BQ9Y287 266 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 LMO7DNF2Z398 122 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 TERTO14746 1132 aaKnown RBP16.38■□□□□ 0.21
CUX2-202ENST00000397643 NOBOXO60393 691 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 CDK11BP21127 795 aaKnown RBP16.38■□□□□ 0.21
CUX2-202ENST00000397643 EEF1GP26641 437 aaKnown RBP16.38■□□□□ 0.21
CUX2-202ENST00000397643 MTIF2P46199 727 aaKnown RBP16.38■□□□□ 0.21
CUX2-202ENST00000397643 CCNHP51946 323 aaPredicted RBP16.38■□□□□ 0.21
CUX2-202ENST00000397643 SLC6A3Q01959 620 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 NFATC3Q12968 1075 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 SRSF6Q13247 344 aaKnown RBP16.38■□□□□ 0.21
CUX2-202ENST00000397643 ENOSF1Q7L5Y1 443 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 B3GNT8Q7Z7M8 397 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 LUZP1Q86V48 1076 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 ZSCAN30Q86W11 494 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 IRF2BP1Q8IU81 584 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 PCDH20Q8N6Y1 951 aaKnown RBP16.38■□□□□ 0.21
CUX2-202ENST00000397643 ANKRD20A12PQ8NF67 263 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 WDR48Q8TAF3 677 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 ASB12Q8WXK4 309 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 NAT6Q93015 286 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 NT5C3BQ969T7 300 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 TBATAQ96M53 351 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 HEPHQ9BQS7 1158 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 SPASTQ9UBP0 616 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 APOBEC3BQ9UH17 382 aaKnown RBP16.38■□□□□ 0.21
CUX2-202ENST00000397643 IPO11Q9UI26 975 aaKnown RBP16.38■□□□□ 0.21
CUX2-202ENST00000397643 PCDHGA7Q9Y5G6 932 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 ACTL7AQ9Y615 435 aa16.38■□□□□ 0.21
CUX2-202ENST00000397643 SCN8AQ9UQD0 1980 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 FLNCQ14315 2725 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 ILVBLA1L0T0 632 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 TSPAN6O43657 245 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 CD160O95971 181 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 OR1E1P30953 314 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 IGFALSP35858 605 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 ADKP55263 362 aaKnown RBP16.37■□□□□ 0.21
CUX2-202ENST00000397643 APBA1Q02410 837 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 SRSF1Q07955 248 aaKnown RBP eCLIP16.37■□□□□ 0.21
CUX2-202ENST00000397643 C1orf61Q13536 156 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 SPIDRQ14159 915 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 HSP90AA4PQ58FG1 418 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 CARD16Q5EG05 197 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 PRRT3Q5FWE3 981 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 TCP11X2Q5H9J9 407 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 CDKAL1Q5VV42 579 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 PHACTR4Q8IZ21 702 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 BTN2A2Q8WVV5 523 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 CENPTQ96BT3 561 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 PGAP3Q96FM1 320 aaPredicted RBP16.37■□□□□ 0.21
CUX2-202ENST00000397643 CLPBQ9H078 707 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 WDCPQ9H6R7 721 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 STARD5Q9NSY2 213 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 IL17BQ9UHF5 180 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 RABGEF1Q9UJ41 708 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 ACSL6Q9UKU0 697 aa16.37■□□□□ 0.21
CUX2-202ENST00000397643 FCF1Q9Y324 198 aaKnown RBP16.37■□□□□ 0.21
CUX2-202ENST00000397643 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.37■□□□□ 0.21
CUX2-202ENST00000397643 PLD2O14939 933 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 YY2O15391 372 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 TPM2P07951 284 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 CELA2BP08218 269 aaPredicted RBP16.36■□□□□ 0.21
CUX2-202ENST00000397643 ITGB6P18564 788 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 SLC5A2P31639 672 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 GKP32189 559 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 RPIAP49247 311 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 SGCGQ13326 291 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 TGIF1Q15583 401 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 TRIM65Q6PJ69 517 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 ZNF783Q6ZMS7 281 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 RNF214Q8ND24 703 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 SHC3Q92529 594 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 C1orf74Q96LT6 269 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 CRACR2AQ9BSW2 395 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 SPON2Q9BUD6 331 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 RRN3Q9NYV6 651 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 DOPEY2Q9Y3R5 2298 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 CHD5Q8TDI0 1954 aa16.36■□□□□ 0.21
CUX2-202ENST00000397643 C16orf96A6NNT2 1141 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 TSHRP16473 764 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 UGT1A5P35504 534 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 USP8P40818 1118 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 SULT1E1P49888 294 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 NFKB2Q00653 900 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 SLC20A2Q08357 652 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 ARHGAP44Q17R89 818 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 RETSATQ6NUM9 610 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 OR6K2Q8NGY2 324 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 EXTL1Q92935 676 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 GLMNQ92990 594 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 RAB7BQ96AH8 199 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 TBCBQ99426 244 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 TM6SF2Q9BZW4 377 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 FAM117AQ9C073 453 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 ZDHHC6Q9H6R6 413 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 SYNDIG1Q9H7V2 258 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 ATP13A1Q9HD20 1204 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.35■□□□□ 0.21
CUX2-202ENST00000397643 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms