RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 SEMG2Q02383 582 aa16.83■□□□□ 0.28
PTPRK-208ENST00000392449 TYRO3Q06418 890 aa16.83■□□□□ 0.28
PTPRK-208ENST00000392449 MYLK3Q32MK0 819 aa16.83■□□□□ 0.28
PTPRK-208ENST00000392449 EFHC2Q5JST6 749 aa16.83■□□□□ 0.28
PTPRK-208ENST00000392449 KYAT3Q6YP21 454 aaKnown RBP16.83■□□□□ 0.28
PTPRK-208ENST00000392449 PDZD3Q86UT5 571 aa16.83■□□□□ 0.28
PTPRK-208ENST00000392449 LRIG1Q96JA1 1093 aa16.83■□□□□ 0.28
PTPRK-208ENST00000392449 GPR27Q9NS67 375 aa16.83■□□□□ 0.28
PTPRK-208ENST00000392449 BPTFQ12830 3046 aa16.83■□□□□ 0.28
PTPRK-208ENST00000392449 GEMIN4P57678 1058 aaKnown RBP16.82■□□□□ 0.28
PTPRK-208ENST00000392449 SNRPD1P62314 119 aaKnown RBP16.82■□□□□ 0.28
PTPRK-208ENST00000392449 CCDC183Q5T5S1 534 aa16.82■□□□□ 0.28
PTPRK-208ENST00000392449 IRF2BP2Q7Z5L9 587 aa16.82■□□□□ 0.28
PTPRK-208ENST00000392449 PLPP6Q8IY26 295 aa16.82■□□□□ 0.28
PTPRK-208ENST00000392449 MCOLN2Q8IZK6 566 aa16.82■□□□□ 0.28
PTPRK-208ENST00000392449 NXPE2Q96DL1 559 aa16.82■□□□□ 0.28
PTPRK-208ENST00000392449 SYT11Q9BT88 431 aa16.82■□□□□ 0.28
PTPRK-208ENST00000392449 C1QTNF2Q9BXJ5 285 aa16.82■□□□□ 0.28
PTPRK-208ENST00000392449 TMEM63CQ9P1W3 806 aa16.82■□□□□ 0.28
PTPRK-208ENST00000392449 HS3ST3A1Q9Y663 406 aa16.82■□□□□ 0.28
PTPRK-208ENST00000392449 IGSF10Q6WRI0 2623 aa16.82■□□□□ 0.28
PTPRK-208ENST00000392449 SMG1Q96Q15 3661 aaKnown RBP16.82■□□□□ 0.28
PTPRK-208ENST00000392449 LY6G6EA0A0G2JKS1 128 aa16.81■□□□□ 0.28
PTPRK-208ENST00000392449 RASA4BC9J798 803 aa16.81■□□□□ 0.28
PTPRK-208ENST00000392449 RASA4O43374 803 aa16.81■□□□□ 0.28
PTPRK-208ENST00000392449 TLX3O43711 291 aaPredicted RBP16.81■□□□□ 0.28
PTPRK-208ENST00000392449 POP4O95707 220 aaKnown RBP16.81■□□□□ 0.28
PTPRK-208ENST00000392449 SGCGQ13326 291 aa16.81■□□□□ 0.28
PTPRK-208ENST00000392449 PDE1CQ14123 709 aaPredicted RBP16.81■□□□□ 0.28
PTPRK-208ENST00000392449 ANO6Q4KMQ2 910 aa16.81■□□□□ 0.28
PTPRK-208ENST00000392449 E4F1Q66K89 784 aaPredicted RBP16.81■□□□□ 0.28
PTPRK-208ENST00000392449 ACAD10Q6JQN1 1059 aa16.81■□□□□ 0.28
PTPRK-208ENST00000392449 GDPD4Q6W3E5 623 aa16.81■□□□□ 0.28
PTPRK-208ENST00000392449 ZNF548Q8NEK5 533 aaPredicted RBP16.81■□□□□ 0.28
PTPRK-208ENST00000392449 APOLD1Q96LR9 279 aa16.81■□□□□ 0.28
PTPRK-208ENST00000392449 GDAP1L1Q96MZ0 367 aa16.81■□□□□ 0.28
PTPRK-208ENST00000392449 CNPY3Q9BT09 278 aa16.81■□□□□ 0.28
PTPRK-208ENST00000392449 TRIM7Q9C029 511 aa16.81■□□□□ 0.28
PTPRK-208ENST00000392449 LHX3Q9UBR4 397 aa16.81■□□□□ 0.28
PTPRK-208ENST00000392449 PNMA8BQ9ULN7 279 aaPredicted RBP16.81■□□□□ 0.28
PTPRK-208ENST00000392449 AK5Q9Y6K8 562 aa16.81■□□□□ 0.28
PTPRK-208ENST00000392449 U3KQA8 63 aa16.81■□□□□ 0.28
PTPRK-208ENST00000392449 LRRK1Q38SD2 2015 aa16.81■□□□□ 0.28
PTPRK-208ENST00000392449 SPTY2D1-AS1A0A0U1RR47 76 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 K7ESM1 405 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 AREL1O15033 823 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 TSPAN6O43657 245 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 MMP20O60882 483 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 PIGNO95427 931 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 CDK4P11802 303 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 FERP16591 822 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 RHOAP61586 193 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 ILKQ13418 452 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 SERINC3Q13530 473 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 COL9A2Q14055 689 aaPredicted RBP16.8■□□□□ 0.28
PTPRK-208ENST00000392449 CA9Q16790 459 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 DCUN1D2Q6PH85 259 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 TTC7BQ86TV6 843 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 VPS36Q86VN1 386 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 RBFAQ8N0V3 343 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 CELF6Q96J87 481 aaKnown RBP16.8■□□□□ 0.28
PTPRK-208ENST00000392449 EPAS1Q99814 870 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 WRAP53Q9BUR4 548 aaKnown RBP16.8■□□□□ 0.28
PTPRK-208ENST00000392449 TTYH3Q9C0H2 523 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 TCEAL2Q9H3H9 227 aaPredicted RBP16.8■□□□□ 0.28
PTPRK-208ENST00000392449 RETREG1Q9H6L5 497 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 CLCA2Q9UQC9 943 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 ATRXP46100 2492 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 CXorf51AA0A1B0GTR3 108 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 ANKRD62A6NC57 917 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 LRRC53A6NM62 1247 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 J3KR12 359 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 FPGTO14772 594 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 CSF2P04141 144 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 NME1P15531 152 aaKnown RBP16.8■□□□□ 0.28
PTPRK-208ENST00000392449 ITPKBP27987 946 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 IGFALSP35858 605 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 RABIFP47224 123 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 EIF2B5Q13144 721 aaKnown RBP16.8■□□□□ 0.28
PTPRK-208ENST00000392449 CYTH1Q15438 398 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 HS1BP3Q53T59 392 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 PARGQ86W56 976 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 ARFGAP1Q8N6T3 406 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 RFFLQ8WZ73 363 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 RAB7BQ96AH8 199 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 PEBP4Q96S96 227 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 OSBPL1AQ9BXW6 950 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 SCUBE2Q9NQ36 999 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 MBNL1Q9NR56 388 aaKnown RBP16.8■□□□□ 0.28
PTPRK-208ENST00000392449 NLGN3Q9NZ94 848 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 IPO11Q9UI26 975 aaKnown RBP16.8■□□□□ 0.28
PTPRK-208ENST00000392449 COQ6Q9Y2Z9 468 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 PCDHB1Q9Y5F3 818 aa16.8■□□□□ 0.28
PTPRK-208ENST00000392449 A0A087WV48 116 aa16.79■□□□□ 0.28
PTPRK-208ENST00000392449 ZSCAN5CA6NGD5 496 aaPredicted RBP16.79■□□□□ 0.28
PTPRK-208ENST00000392449 GOLGA6L22H0YM25 854 aa16.79■□□□□ 0.28
PTPRK-208ENST00000392449 SCAMP1O15126 338 aa16.79■□□□□ 0.28
PTPRK-208ENST00000392449 IGSF6O95976 241 aa16.79■□□□□ 0.28
PTPRK-208ENST00000392449 CKMT1AP12532 417 aa16.79■□□□□ 0.28
PTPRK-208ENST00000392449 TIMP2P16035 220 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms