RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 A0A096LPK6 155 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 MYMKA6NI61 221 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 BTBD19C9JJ37 291 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 OR1I1O60431 355 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 CDC42EP1Q00587 391 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 BNIP2Q12982 314 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 CDYL2Q8N8U2 506 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 SLC25A23Q9BV35 468 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 ZNF471Q9BX82 626 aaPredicted RBP12.94□□□□□ -0.34
USP47-202ENST00000339865 ZBTB14O43829 449 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 SNRPB2P08579 225 aaKnown RBP12.94□□□□□ -0.34
USP47-202ENST00000339865 ANPEPP15144 967 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 RPA3P35244 121 aaPredicted RBP12.94□□□□□ -0.34
USP47-202ENST00000339865 NIF3L1Q9GZT8 377 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 KLQ9UEF7 1012 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 ZNF639Q9UID6 485 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 PQBP1O60828 265 aaKnown RBP12.94□□□□□ -0.34
USP47-202ENST00000339865 NOL4O94818 638 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 ITGA2P17301 1181 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 NTSP30990 170 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 MAGEA6P43360 314 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 SP140Q13342 867 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 GXYLT1Q4G148 440 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 HYIQ5T013 277 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 LCN1P1Q5VSP4 162 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 SPATA5L1Q9BVQ7 753 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 ACAT2Q9BWD1 397 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 NECTIN3Q9NQS3 549 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 FAM105AQ9NUU6 356 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 CASZ1Q86V15 1759 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 DCDC2CA8MYV0 355 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 RIPK2O43353 540 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 STOMP27105 288 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 SSTP61278 116 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 NOTUMQ6P988 496 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 CPNE1Q99829 537 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 RBM22Q9NW64 420 aaKnown RBP eCLIP12.94□□□□□ -0.34
USP47-202ENST00000339865 MYH7BA7E2Y1 1941 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 IGSF9BQ9UPX0 1349 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 GATBO75879 557 aaKnown RBP12.94□□□□□ -0.34
USP47-202ENST00000339865 SLC6A2P23975 617 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 ACOT1Q86TX2 421 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 PLCZ1Q86YW0 608 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 TSEN15Q8WW01 171 aaKnown RBP12.94□□□□□ -0.34
USP47-202ENST00000339865 SELENOMQ8WWX9 145 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 NDNQ99608 321 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 NMRAL1Q9HBL8 299 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 NUP160Q12769 1436 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 MAGEB16A2A368 324 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 NCAPD2Q15021 1401 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 CRY2Q49AN0 593 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 TFAP2DQ7Z6R9 452 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 RASAL3Q86YV0 1011 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 ZNF548Q8NEK5 533 aaPredicted RBP12.94□□□□□ -0.34
USP47-202ENST00000339865 APBB2Q92870 758 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 ARL15Q9NXU5 204 aa12.94□□□□□ -0.34
USP47-202ENST00000339865 SAMD4AQ9UPU9 718 aaKnown RBP12.94□□□□□ -0.34
USP47-202ENST00000339865 MLH3Q9UHC1 1453 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 SGPL1O95470 568 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 HMGCRP04035 888 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 TUBG1P23258 451 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 EIF4BP23588 611 aaKnown RBP12.93□□□□□ -0.34
USP47-202ENST00000339865 CAV3P56539 151 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 TSPAN5P62079 268 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 CUL2Q13617 745 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 EPHA7Q15375 998 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 CA9Q16790 459 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 DCP1BQ8IZD4 617 aaKnown RBP12.93□□□□□ -0.34
USP47-202ENST00000339865 SLC4A11Q8NBS3 891 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 FAM228BP0C875 321 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 MGAT1P26572 445 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 MECP2P51608 486 aaKnown RBP12.93□□□□□ -0.34
USP47-202ENST00000339865 SLC25A3Q00325 362 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 SLC10A7Q0GE19 358 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 SQLEQ14534 574 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 GRM4Q14833 912 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 ADGRG2Q8IZP9 1017 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 APOPT1Q96IL0 206 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 FNDC11Q9BVV2 318 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 RRAGCQ9HB90 399 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 FBXO9Q9UK97 447 aaPredicted RBP12.93□□□□□ -0.34
USP47-202ENST00000339865 H0Y858 1186 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 MBL2P11226 248 aaPredicted RBP12.93□□□□□ -0.34
USP47-202ENST00000339865 MLLT6P55198 1093 aaPredicted RBP12.93□□□□□ -0.34
USP47-202ENST00000339865 PRKCEQ02156 737 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 PDIA5Q14554 519 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 GTF2IRD2BQ6EKJ0 949 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 AMIGO2Q86SJ2 522 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 GTF2IRD2Q86UP8 949 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 SLC47A2Q86VL8 602 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 DCLK3Q9C098 648 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 TMLHEQ9NVH6 421 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 MAT2BQ9NZL9 334 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 ZNF214Q9UL59 606 aaPredicted RBP12.93□□□□□ -0.34
USP47-202ENST00000339865 CCNE2O96020 404 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 AZGP1P25311 298 aaKnown RBP12.93□□□□□ -0.34
USP47-202ENST00000339865 PTPN3P26045 913 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 CDK9P50750 372 aaKnown RBP12.93□□□□□ -0.34
USP47-202ENST00000339865 RNF180Q86T96 592 aa12.93□□□□□ -0.34
USP47-202ENST00000339865 ATXN2LQ8WWM7 1075 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms