RNA–Protein interactions for RNA: ENST00000334136.9

HDAC6-201, Transcript of histone deacetylase 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC6, Length 4,190 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-201ENST00000334136 FRMD8P1Q9BZ68 369 aaPredicted RBP11.94□□□□□ -0.5
HDAC6-201ENST00000334136 GRIP2Q9C0E4 1043 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 LMAN2LQ9H0V9 348 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 CCSER2Q9H7U1 834 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 ZMYM5Q9UJ78 669 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 CNTN6Q9UQ52 1028 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 BEST1O76090 585 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 GOT1P17174 413 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 PSMC3P17980 439 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 ERCC2P18074 760 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 NSUN2Q08J23 767 aaKnown RBP eCLIP11.94□□□□□ -0.5
HDAC6-201ENST00000334136 BST1Q10588 318 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 KCTD21Q4G0X4 260 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 MARC1Q5VT66 337 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 PDPK2PQ6A1A2 396 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 C6orf89Q6UWU4 347 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 HFE2Q6ZVN8 426 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 TMEM173Q86WV6 379 aaPredicted RBP11.94□□□□□ -0.5
HDAC6-201ENST00000334136 PBXIP1Q96AQ6 731 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 ILKAPQ9H0C8 392 aaPredicted RBP11.94□□□□□ -0.5
HDAC6-201ENST00000334136 NSUN3Q9H649 340 aaKnown RBP11.94□□□□□ -0.5
HDAC6-201ENST00000334136 GKN1Q9NS71 199 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 RBM22Q9NW64 420 aaKnown RBP eCLIP11.94□□□□□ -0.5
HDAC6-201ENST00000334136 ANGPTL3Q9Y5C1 460 aa11.94□□□□□ -0.5
HDAC6-201ENST00000334136 C5orf60A6NFR6 353 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 SMAPO00193 183 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 PSMD3O43242 534 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 PMPCBO75439 489 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 SMNDC1O75940 238 aaKnown RBP eCLIP11.93□□□□□ -0.51e-6■■□□□ 12.9
HDAC6-201ENST00000334136 TGM2P21980 687 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 SPRED3Q2MJR0 410 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 ACBD5Q5T8D3 534 aaPredicted RBP11.93□□□□□ -0.5
HDAC6-201ENST00000334136 N4BP2L1Q5TBK1 243 aaPredicted RBP11.93□□□□□ -0.5
HDAC6-201ENST00000334136 CES3Q6UWW8 571 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 CCNJLQ8IV13 435 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 CFAP52Q8N1V2 620 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 IPMKQ8NFU5 416 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 TRIM15Q9C019 465 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 LRMDAQ9H2I8 198 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 MARCH5Q9NX47 278 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 CHCHD3Q9NX63 227 aaKnown RBP11.93□□□□□ -0.5
HDAC6-201ENST00000334136 SNX5Q9Y5X3 404 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 ACSL4O60488 711 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 ATP5BP06576 529 aaKnown RBP11.93□□□□□ -0.5
HDAC6-201ENST00000334136 HNRNPA1P09651 372 aaKnown RBP eCLIP11.93□□□□□ -0.5
HDAC6-201ENST00000334136 SCNN1AP37088 669 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 TMED10P49755 219 aaKnown RBP11.93□□□□□ -0.5
HDAC6-201ENST00000334136 AIF1P55008 147 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 HDAC4P56524 1084 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 TMTC4Q5T4D3 741 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 SMYD5Q6GMV2 418 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 TTC33Q6PID6 262 aaPredicted RBP11.93□□□□□ -0.5
HDAC6-201ENST00000334136 ZDHHC24Q6UX98 284 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 CDC26Q8NHZ8 85 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 ZNF317Q96PQ6 595 aaPredicted RBP11.93□□□□□ -0.5
HDAC6-201ENST00000334136 RNF157Q96PX1 679 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 C2orf49Q9BVC5 232 aaPredicted RBP11.93□□□□□ -0.5
HDAC6-201ENST00000334136 MAGEB5Q9BZ81 275 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 ZNF576Q9H609 170 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 LRRC4CQ9HCJ2 640 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 MRPL40Q9NQ50 206 aaKnown RBP11.93□□□□□ -0.5
HDAC6-201ENST00000334136 MPP6Q9NZW5 540 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 KDM1AO60341 852 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 POLR2EP19388 210 aaKnown RBP11.93□□□□□ -0.5
HDAC6-201ENST00000334136 SKIV2L2P42285 1042 aaKnown RBP11.93□□□□□ -0.5
HDAC6-201ENST00000334136 PKNOX1P55347 436 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 MRPS22P82650 360 aaKnown RBP11.93□□□□□ -0.5
HDAC6-201ENST00000334136 MMRN1Q13201 1228 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 PARP6Q2NL67 630 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 EFHBQ8N7U6 833 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 CLSTN3Q9BQT9 956 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 NT5MQ9NPB1 228 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 NDUFA13Q9P0J0 144 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 CHKBQ9Y259 395 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 KCNK1O00180 336 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 GLRA3O75311 464 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 ADH1CP00326 375 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 ABCG1P45844 678 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 RENBPP51606 427 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 PPIDQ08752 370 aaKnown RBP11.93□□□□□ -0.5
HDAC6-201ENST00000334136 EML3Q32P44 896 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 WLSQ5T9L3 541 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 BNC2Q6ZN30 1099 aaPredicted RBP11.93□□□□□ -0.5
HDAC6-201ENST00000334136 TTC9BQ8N6N2 239 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 SH3RF2Q8TEC5 729 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 CNDP1Q96KN2 507 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 PPP1R2P1Q96PQ5 205 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 NMUR2Q9GZQ4 415 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 CDYLQ9Y232 598 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 ACTL7BQ9Y614 415 aa11.93□□□□□ -0.5
HDAC6-201ENST00000334136 PARP14Q460N5 1801 aa11.92□□□□□ -0.5
HDAC6-201ENST00000334136 RBBP6Q7Z6E9 1792 aaKnown RBP11.92□□□□□ -0.5
HDAC6-201ENST00000334136 GSC2O15499 205 aa11.92□□□□□ -0.5
HDAC6-201ENST00000334136 SYNCRIPO60506 623 aaKnown RBP11.92□□□□□ -0.5
HDAC6-201ENST00000334136 EPCAMP16422 314 aa11.92□□□□□ -0.5
HDAC6-201ENST00000334136 FOXN2P32314 431 aa11.92□□□□□ -0.5
HDAC6-201ENST00000334136 NR2C2P49116 596 aa11.92□□□□□ -0.5
HDAC6-201ENST00000334136 ERVFC1P60507 584 aa11.92□□□□□ -0.5
HDAC6-201ENST00000334136 C16orf72Q14CZ0 275 aa11.92□□□□□ -0.5
HDAC6-201ENST00000334136 TBCCQ15814 346 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms