RNA–Protein interactions for RNA: ENST00000312438.7

CLCF1-201, Transcript of cardiotrophin like cytokine factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCF1, Length 1,844 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1-201ENST00000312438 ZMPSTE24O75844 475 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 ITGA2BP08514 1039 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 HLA-DPA1P20036 260 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 MZF1P28698 734 aaPredicted RBP16.91■□□□□ 0.3
CLCF1-201ENST00000312438 CCNFP41002 786 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 CCT5P48643 541 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 NEK3P51956 506 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 ARF5P84085 180 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 SHHQ15465 462 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 TEAD2Q15562 447 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 INO80DQ53TQ3 878 aaPredicted RBP16.91■□□□□ 0.3
CLCF1-201ENST00000312438 SIRPB2Q5JXA9 342 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 ESRP1Q6NXG1 681 aaKnown RBP16.91■□□□□ 0.3
CLCF1-201ENST00000312438 ELMSAN1Q6PJG2 1045 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 SH3RF2Q8TEC5 729 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 AGAP2Q99490 1192 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 IARS2Q9NSE4 1012 aaKnown RBP16.91■□□□□ 0.3
CLCF1-201ENST00000312438 TREX1Q9NSU2 369 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 MKS1Q9NXB0 559 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 VPS28Q9UK41 221 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 PLXNA4Q9HCM2 1894 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 SHROOM3Q8TF72 1996 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 PER2O15055 1255 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 INSIG1O15503 277 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 CYBBP04839 570 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 ATXN1LP0C7T5 689 aaKnown RBP16.91■□□□□ 0.3
CLCF1-201ENST00000312438 CR2P20023 1033 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 SCNN1BP51168 640 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 CSE1LP55060 971 aaKnown RBP16.91■□□□□ 0.3
CLCF1-201ENST00000312438 PDE1BQ01064 536 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 NSUN2Q08J23 767 aaKnown RBP eCLIP16.91■□□□□ 0.3
CLCF1-201ENST00000312438 LAMB3Q13751 1172 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 CNGA3Q16281 694 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 FYB2Q5VWT5 728 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 NLRP9Q7RTR0 991 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 ALG14Q96F25 216 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 RBBP8Q99708 897 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 IQCGQ9H095 443 aaKnown RBP16.91■□□□□ 0.3
CLCF1-201ENST00000312438 NSRP1Q9H0G5 558 aaKnown RBP16.91■□□□□ 0.3
CLCF1-201ENST00000312438 SMG9Q9H0W8 520 aaKnown RBP16.91■□□□□ 0.3
CLCF1-201ENST00000312438 NOD2Q9HC29 1040 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 ZMYM5Q9UJ78 669 aa16.91■□□□□ 0.3
CLCF1-201ENST00000312438 ARIH1Q9Y4X5 557 aaPredicted RBP16.91■□□□□ 0.3
CLCF1-201ENST00000312438 EBAG9O00559 213 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 ZNF197O14709 1029 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 SNAP91O60641 907 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 GJB3O75712 270 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 VAPBO95292 243 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 PAPSS2O95340 614 aaPredicted RBP16.9■□□□□ 0.3
CLCF1-201ENST00000312438 CD160O95971 181 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 FGF1P05230 155 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 POU2F2P09086 479 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 CSKP41240 450 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 ARCN1P48444 511 aaKnown RBP16.9■□□□□ 0.3
CLCF1-201ENST00000312438 SEPT6Q14141 434 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 TPGS1Q6ZTW0 290 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 NDUFAF2Q8N183 169 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 DCAF4L2Q8NA75 395 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 FIBINQ8TAL6 211 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 NUDCD1Q96RS6 583 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 SRPK1Q96SB4 655 aaKnown RBP16.9■□□□□ 0.3
CLCF1-201ENST00000312438 SLC13A1Q9BZW2 595 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 VPS11Q9H270 941 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 SCUBE2Q9NQ36 999 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 TDP1Q9NUW8 608 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 KIAA1522Q9P206 1035 aaPredicted RBP16.9■□□□□ 0.3
CLCF1-201ENST00000312438 SLC17A7Q9P2U7 560 aa16.9■□□□□ 0.3
CLCF1-201ENST00000312438 CCDC195A0A1B0GUA6 201 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 CCDC78A2IDD5 438 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 ALADP13716 330 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 CRHR1P34998 444 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 LIMK2P53671 638 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 SMAD1Q15797 465 aaKnown RBP16.89■□□□□ 0.29
CLCF1-201ENST00000312438 PDK4Q16654 411 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 QPCTQ16769 361 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 TSTD2Q5T7W7 516 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 GKAP1Q5VSY0 366 aaPredicted RBP16.89■□□□□ 0.29
CLCF1-201ENST00000312438 KIAA0930Q6ICG6 404 aaPredicted RBP16.89■□□□□ 0.29
CLCF1-201ENST00000312438 FOXR1Q6PIV2 292 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 RGS9BPQ6ZS82 235 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 CNTN4Q8IWV2 1026 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 BHMTQ93088 406 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 C2orf49Q9BVC5 232 aaPredicted RBP16.89■□□□□ 0.29
CLCF1-201ENST00000312438 CCL26Q9Y258 94 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 PLLPQ9Y342 182 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 HCFC2Q9Y5Z7 792 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 TIMM44O43615 452 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 NDST3O95803 873 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 ALDOAP04075 364 aaKnown RBP16.89■□□□□ 0.29
CLCF1-201ENST00000312438 TAC1P20366 129 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 FOXN2P32314 431 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 ETV4P43268 484 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 RGRP47804 291 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 SLC5A9Q2M3M2 681 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 PRSS36Q5K4E3 855 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 RETSATQ6NUM9 610 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 LINGO4Q6UY18 593 aa16.89■□□□□ 0.29
CLCF1-201ENST00000312438 GRASPQ7Z6J2 395 aaPredicted RBP16.89■□□□□ 0.29
CLCF1-201ENST00000312438 RBM23Q86U06 439 aaKnown RBP16.89■□□□□ 0.29
CLCF1-201ENST00000312438 GABPB2Q8TAK5 448 aaPredicted RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms