RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 PHC2Q8IXK0 858 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 DSELQ8IZU8 1212 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 ALLCQ8N6M5 410 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 RAB2BQ8WUD1 216 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 RXFP2Q8WXD0 754 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 MRPL48Q96GC5 212 aaKnown RBP10.54□□□□□ -0.72
VCL-201ENST00000211998 RPRD1AQ96P16 312 aaPredicted RBP10.54□□□□□ -0.72
VCL-201ENST00000211998 RHOBTB2Q9BYZ6 727 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 LRRC42Q9Y546 428 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 FAM205AQ6ZU69 1335 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 ARPC4-TTLL3A0A0A6YYG9 625 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 J3QRK9 145 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 HOXC6P09630 235 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 LHX1P48742 406 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 ANXA11P50995 505 aaKnown RBP10.54□□□□□ -0.72
VCL-201ENST00000211998 PSMD4P55036 377 aaKnown RBP10.54□□□□□ -0.72
VCL-201ENST00000211998 SCN1BQ07699 218 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 ILF2Q12905 390 aaKnown RBP10.54□□□□□ -0.72
VCL-201ENST00000211998 MTA1Q13330 715 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 LIN54Q6MZP7 749 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 FAM117BQ6P1L5 589 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 P2RY8Q86VZ1 359 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 FBXL8Q96CD0 374 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 YIPF2Q9BWQ6 316 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 COG5Q9UP83 839 aa10.54□□□□□ -0.72
VCL-201ENST00000211998 CPS1P31327 1500 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 ZC3H13Q5T200 1668 aaKnown RBP10.53□□□□□ -0.72
VCL-201ENST00000211998 JCHAINP01591 159 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 TSHRP16473 764 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 ARF5P84085 180 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 C4orf19Q8IY42 314 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 HS6ST3Q8IZP7 471 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 CBR4Q8N4T8 237 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 DNERQ8NFT8 737 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 LRTOMTQ8WZ04 291 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 MRPS31Q92665 395 aaKnown RBP10.53□□□□□ -0.72
VCL-201ENST00000211998 EHD1Q9H4M9 534 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 ABCB9Q9NP78 766 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 PNPLA8Q9NP80 782 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 SAE1Q9UBE0 346 aaPredicted RBP10.53□□□□□ -0.72
VCL-201ENST00000211998 NCANO14594 1321 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 I3L521 148 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 M0QX08 132 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 SEC22BO75396 215 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 TGDSO95455 350 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 MAPTP10636 758 aaKnown RBP10.53□□□□□ -0.72
VCL-201ENST00000211998 AZGP1P25311 298 aaKnown RBP10.53□□□□□ -0.72
VCL-201ENST00000211998 PSMA3P25788 255 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 TGFB2P61812 414 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 OLR1P78380 273 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 PTSQ03393 145 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 HERC3Q15034 1050 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 RFX4Q33E94 735 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 INTS5Q6P9B9 1019 aaKnown RBP10.53□□□□□ -0.72
VCL-201ENST00000211998 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.53□□□□□ -0.72
VCL-201ENST00000211998 CENPSQ8N2Z9 138 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 ARRDC4Q8NCT1 418 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 LNX1Q8TBB1 728 aaPredicted RBP10.53□□□□□ -0.72
VCL-201ENST00000211998 GFM1Q96RP9 751 aaKnown RBP10.53□□□□□ -0.72
VCL-201ENST00000211998 SMPD3Q9NY59 655 aaPredicted RBP10.53□□□□□ -0.72
VCL-201ENST00000211998 SALL1Q9NSC2 1324 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 CAPGP40121 348 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 CAPZA2P47755 286 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 NPTX2P47972 431 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 ANKS6Q68DC2 871 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 ZNF720Q7Z2F6 126 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 SLFN11Q7Z7L1 901 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 C11orf96Q7Z7L8 435 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 ADGRF2Q8IZF7 708 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 AADATQ8N5Z0 425 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 RGS17Q9UGC6 210 aaPredicted RBP10.53□□□□□ -0.72
VCL-201ENST00000211998 SLC25A13Q9UJS0 675 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.53□□□□□ -0.721e-7■■■□□ 18.3
VCL-201ENST00000211998 GNG14A0A1W2PPG7 69 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 BPGMP07738 259 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 ALDH4A1P30038 563 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 DSG3P32926 999 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 GMFBP60983 142 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 PRKCQQ04759 706 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 RALGPS1Q5JS13 557 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 HMBOX1Q6NT76 420 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 SPPL2CQ8IUH8 684 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 CCDC28AQ8IWP9 274 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 DEPDC4Q8N2C3 294 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 METTL6Q8TCB7 284 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 FBXO32Q969P5 355 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 SYNDIG1Q9H7V2 258 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 CAB39LQ9H9S4 337 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 ERVK-5Q9HDB9 667 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 TAS2R1Q9NYW7 299 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 LEF1Q9UJU2 399 aaPredicted RBP10.53□□□□□ -0.72
VCL-201ENST00000211998 PCDHA11Q9Y5I1 949 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 DIP2CQ9Y2E4 1556 aa10.53□□□□□ -0.72
VCL-201ENST00000211998 CYB561D2O14569 222 aa10.52□□□□□ -0.72
VCL-201ENST00000211998 ALOX15BO15296 676 aa10.52□□□□□ -0.72
VCL-201ENST00000211998 CHADO15335 359 aa10.52□□□□□ -0.72
VCL-201ENST00000211998 GLP2RO95838 553 aa10.52□□□□□ -0.72
VCL-201ENST00000211998 ACO1P21399 889 aaKnown RBP10.52□□□□□ -0.72
VCL-201ENST00000211998 RCVRNP35243 200 aa10.52□□□□□ -0.72
VCL-201ENST00000211998 HNF4AP41235 474 aa10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms