RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Akap14Q3V0I7 536 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 AcdQ5EE38 416 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Nat14Q8BVG8 206 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 GraspQ9JJA9 392 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Rhbdl2A2AGA4 302 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Bnc1O35914 961 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Q5XFZ0 217 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Ssx9Q6XAS3 170 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Cand2Q6ZQ73 1235 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Olfr213Q7TS32 327 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Olfr697Q8VFM4 317 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Olfr348Q8VGK3 313 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Kiaa2013Q91X21 634 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Decr1Q9CQ62 335 aaKnown RBP15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Ern2Q9Z2E3 911 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Ccdc120A2AEV7 629 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Ptchd4B9EKX1 904 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Gm8011K7N6Y5 207 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Nfkbil1O88995 381 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Mxd1P50538 227 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Lrrc47Q505F5 581 aaKnown RBP15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Hbs1lQ69ZS7 682 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Ggnbp1Q6K1E7 370 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Prrg3Q6PAQ9 231 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Ssxb3Q6XAS4 170 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Clec1aQ8BWY2 269 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Mrps2Q924T2 291 aaKnown RBP15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Dok4Q99KE3 325 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Trim33Q99PP7 1142 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Ssxb1Q9CPU1 170 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Ttc30bQ9CY00 664 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Rnf225Q9D7D1 332 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Ndufs3Q9DCT2 263 aaKnown RBP15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Wdr12Q9JJA4 423 aa15.69■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Slc10a3P21129 473 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Pdap1Q3UHX2 181 aaKnown RBP15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Tmem45aQ60774 273 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Abcd2Q61285 741 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Prl3a1Q78Y73 227 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Naaladl1Q7M758 745 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Olfr1505Q7TQQ2 316 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Tyw3Q8BSA9 257 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Eif3lQ8QZY1 564 aaKnown RBP15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Dapk2Q8VDF3 370 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Sf3b1Q99NB9 1304 aaKnown RBP15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Ilf2Q9CXY6 390 aaKnown RBP15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Vmn2r25W4VSP2 855 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Zfp882E9Q4R4 555 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Chrna1P04756 457 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 CochQ62507 552 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 ProcrQ64695 242 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Pgs1Q8BHF7 553 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Ccdc184Q8BMK5 191 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Cpne3Q8BT60 533 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Cops7bQ8BV13 264 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Rsl1d1Q8BVY0 452 aaKnown RBP15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Mtif2Q91YJ5 727 aaKnown RBP15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Oas1cQ924S2 362 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Q99KU6 348 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Cstf3Q99LI7 717 aaKnown RBP15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Hes6Q9JHE6 224 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Mpp6Q9JLB0 553 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Myh8P13542 1937 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 NuggcD3YWJ0 796 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Scarf2P59222 833 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Phactr4Q501J7 694 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Nr1h4Q60641 488 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Phf21aQ6ZPK0 659 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Suz12Q80U70 741 aaKnown RBP15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Prkaa2Q8BRK8 552 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 MmadhcQ99LS1 296 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Sike1Q9CPR7 207 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 QkiQ9QYS9 341 aaKnown RBP15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 F6Y6L6 278 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 ClockO08785 855 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 EgfP01132 1217 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 ThbdP15306 577 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Ptpn5P54830 541 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 McuQ3UMR5 350 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Cldn11Q60771 207 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Fcrl5Q68SN8 596 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Atg16l2Q6KAU8 623 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Tecpr1Q80VP0 1166 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 SgtaQ8BJU0 315 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Impg1Q8R1W8 798 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Brd8Q8R3B7 951 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Ttc39cQ8VE09 580 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Tmbim4Q9DA39 238 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Rnft1Q9DCN7 395 aa15.68■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Cntnap5aQ0V8T9 1304 aa15.67■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Btnl4A2CG29 586 aa15.67■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Gm4907B1AXB9 411 aa15.67■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Vmn2r7E9PYL5 915 aa15.67■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Tcp10cE9Q046 482 aa15.67■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Vmn2r3H3BJ88 915 aa15.67■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Vmn2r6H3BK29 913 aa15.67■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Vmn2r70K7N702 854 aa15.67■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Gm3755K7N743 167 aa15.67■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 TecP24604 630 aa15.67■□□□□ 0.1
Ccdc88b-201ENSMUST00000113440 Vav1P27870 845 aa15.67■□□□□ 0.1
Retrieved 100 of 22,080 RNA–protein pairs in 29.6 ms