RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 SNX13Q9Y5W8 968 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 ADM5C9JUS6 153 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 HUS1O60921 280 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 APOA4P06727 396 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 NCAM1P13591 858 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 ZNF26P17031 533 aaPredicted RBP13.37□□□□□ -0.27
CLN3-210ENST00000563874 NPR3P17342 541 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 RPL10P27635 214 aaKnown RBP13.37□□□□□ -0.27
CLN3-210ENST00000563874 PLK1P53350 603 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 PSME3P61289 254 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 PPP1R3AQ16821 1122 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 CNSTQ6PJW8 725 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 PAQR9Q6ZVX9 377 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 MYO1HQ8N1T3 1032 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 TXNDC5Q8NBS9 432 aaKnown RBP13.37□□□□□ -0.27
CLN3-210ENST00000563874 TNFRSF12AQ9NP84 129 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 RHBDL2Q9NX52 303 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 GMPR2Q9P2T1 348 aaKnown RBP13.37□□□□□ -0.27
CLN3-210ENST00000563874 VPS28Q9UK41 221 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 TMCO1Q9UM00 188 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 DMTF1Q9Y222 760 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 RNF11Q9Y3C5 154 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 SHROOM3Q8TF72 1996 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 WDR90Q96KV7 1748 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 C9IYK1 514 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 PIRO00625 290 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 SDHDO14521 159 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 STRNO43815 780 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 TADA2AO75478 443 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 FAM163BP0C2L3 166 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 SH3BGRP55822 239 aaPredicted RBP13.37□□□□□ -0.27
CLN3-210ENST00000563874 GJA9P57773 515 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 APOFQ13790 326 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 IL31Q6EBC2 164 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 ARHGAP36Q6ZRI8 547 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 CLEC20AQ6ZU45 233 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 PDZD4Q76G19 769 aaPredicted RBP13.37□□□□□ -0.27
CLN3-210ENST00000563874 LCA5Q86VQ0 697 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 DLG3Q92796 817 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 CIB1Q99828 191 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 ATXN3LQ9H3M9 355 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 CAAP1Q9H8G2 361 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 WDR6Q9NNW5 1121 aaKnown RBP13.37□□□□□ -0.27
CLN3-210ENST00000563874 CHST12Q9NRB3 414 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 EPS15L1Q9UBC2 864 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 VTI1BQ9UEU0 232 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 SLC2A6Q9UGQ3 507 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 UBQLN1Q9UMX0 589 aaKnown RBP13.37□□□□□ -0.27
CLN3-210ENST00000563874 AP4S1Q9Y587 144 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 PCDHGA7Q9Y5G6 932 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 PAPPA2Q9BXP8 1791 aa13.37□□□□□ -0.27
CLN3-210ENST00000563874 POLR2AP24928 1970 aaKnown RBP13.37□□□□□ -0.27
CLN3-210ENST00000563874 TARM1B6A8C7 271 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 FAM200BP0CF97 657 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 NPY2RP49146 381 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 CDH17Q12864 832 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 MTX3Q5HYI7 312 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 PITRM1Q5JRX3 1037 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 ESRP1Q6NXG1 681 aaKnown RBP13.36□□□□□ -0.27
CLN3-210ENST00000563874 TAPT1Q6NXT6 567 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 GPRIN1Q7Z2K8 1008 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 IPMKQ8NFU5 416 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 RDH11Q8TC12 318 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 TNIP3Q96KP6 325 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 SLC29A1Q99808 456 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 SLC39A3Q9BRY0 314 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 POMKQ9H5K3 350 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 GPRC5DQ9NZD1 345 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 CEP350Q5VT06 3117 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 FAM95CA0A1B0GW59 222 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 TRIM38O00635 465 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 AURKAO14965 403 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 USP17L7P0C7H9 530 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 CDK4P11802 303 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 TAF6P49848 677 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 TRIML2Q8N7C3 387 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 CNTD1Q8N815 330 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 TSPAN14Q8NG11 270 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 FAM110BQ8TC76 370 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 ELMO2Q96JJ3 720 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 CCT7Q99832 543 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 OSBPL2Q9H1P3 480 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 ANKRD6Q9Y2G4 727 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 DERAQ9Y315 318 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 A0A0G2JLL6 359 aaPredicted RBP13.36□□□□□ -0.27
CLN3-210ENST00000563874 ARHGEF37A1IGU5 675 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 MAGEB16A2A368 324 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 PENKP01210 267 aaPredicted RBP13.36□□□□□ -0.27
CLN3-210ENST00000563874 STMN1P16949 149 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 YBX3P16989 372 aaKnown RBP eCLIP13.36□□□□□ -0.27
CLN3-210ENST00000563874 TSPAN8P19075 237 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 NR1H2P55055 460 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 TAS2R39P59534 338 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 COG7P83436 770 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 HPCAP84074 193 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 TMEM259Q4ZIN3 620 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 AGKQ53H12 422 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 WSCD1Q658N2 575 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 MAMDC4Q6UXC1 1216 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 TRIM67Q6ZTA4 783 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms