RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 SNRPB2P08579 225 aaKnown RBP9.8□□□□□ -0.84
SYNE1-230ENST00000495090 NFICP08651 508 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 ATXN8OSP0DMR3 200 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 CYP2C8P10632 490 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 JUNBP17275 347 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-230ENST00000495090 CKMT2P17540 419 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 DNAJB2P25686 324 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 GJA8P48165 433 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 NDST1P52848 882 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 PRAMEP78395 509 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 SP2Q02086 613 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 LAMTOR4Q0VGL1 99 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 IFRD2Q12894 506 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-230ENST00000495090 NFATC3Q12968 1075 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 TUBA3CQ13748 450 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 FASTKQ14296 549 aaKnown RBP9.8□□□□□ -0.84
SYNE1-230ENST00000495090 ATP6AP1Q15904 470 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 DGKDQ16760 1214 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 GOLGA7BQ2TAP0 167 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 STYK1Q6J9G0 422 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 LRRC8EQ6NSJ5 796 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 TMEM53Q6P2H8 277 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 FRA10AC1Q70Z53 315 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 CCDC80Q76M96 950 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 SLC26A9Q7LBE3 791 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 STRADAQ7RTN6 431 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 SPRED1Q7Z699 444 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 KCNMB4Q86W47 210 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 AFAP1L2Q8N4X5 818 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 PCDH20Q8N6Y1 951 aaKnown RBP9.8□□□□□ -0.84
SYNE1-230ENST00000495090 MINDY2Q8NBR6 621 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 REPS2Q8NFH8 660 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 HMGCLL1Q8TB92 370 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 TANKQ92844 425 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 ACDQ96AP0 544 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 FEM1CQ96JP0 617 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 FAM167AQ96KS9 214 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 PPP1R36Q96LQ0 422 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 AGAP2Q99490 1192 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 LGMNQ99538 433 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 YIPF2Q9BWQ6 316 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 TMEM39BQ9GZU3 492 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 FZD8Q9H461 694 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 RHOJQ9H4E5 214 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 ASB7Q9H672 318 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 CAB39LQ9H9S4 337 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 MEAF6Q9HAF1 191 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 AGPAT4Q9NRZ5 378 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 ATAD3AQ9NVI7 634 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 RIC8BQ9NVN3 520 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 NCKIPSDQ9NZQ3 722 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 CROTQ9UKG9 612 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 TNFSF13BQ9Y275 285 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 YDJCA8MPS7 323 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 BBIP1A8MTZ0 92 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 CFAP99D6REC4 459 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 H0YIN7 160 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 GOLGA8TH3BQL2 631 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 AP3B1O00203 1094 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 MFSD11O43934 449 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 DLX3O60479 287 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 TIPRLO75663 272 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 RASAL1O95294 804 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 MYL3P08590 195 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 CXCL8P10145 99 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 FCGR1AP12314 374 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 ZNF24P17028 368 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 CCNA2P20248 432 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 FUT4P22083 530 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 GNL1P36915 607 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-230ENST00000495090 CCR10P46092 362 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 NPY2RP49146 381 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 TMED10P49755 219 aaKnown RBP9.79□□□□□ -0.84
SYNE1-230ENST00000495090 HLCSP50747 726 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 ATP6V0D1P61421 351 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 INPP5AQ14642 412 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 DCAF6Q58WW2 860 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 FGD3Q5JSP0 725 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 TMTC4Q5T4D3 741 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 GPR107Q5VW38 600 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 BSPRYQ5W0U4 402 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 FAM160B1Q5W0V3 765 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 PMF1Q6P1K2 205 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 PRMT9Q6P2P2 845 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 CES3Q6UWW8 571 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 LINC00299Q6ZSB3 139 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 PTAR1Q7Z6K3 402 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-230ENST00000495090 EPHX4Q8IUS5 362 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 ZNF567Q8N184 647 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 FSTL5Q8N475 847 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-230ENST00000495090 CBR4Q8N4T8 237 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 RNF149Q8NC42 400 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 MTMR14Q8NCE2 650 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 SPPL2BQ8TCT7 592 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 SLC35F5Q8WV83 523 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 CANT1Q8WVQ1 401 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 ATXN7L3BQ96GX2 97 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 MARK4Q96L34 752 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 GMLQ99445 158 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 PCYT2Q99447 389 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms